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1 <tool id="roary_plots" name="Roary plots" version="1.0">
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2 <description>Generate plots from Roary outputs</description>
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3 <requirements>
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4 <requirement type="package" version="1.78">biopython</requirement>
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5 <requirement type="package" version="3.4.2">matplotlib</requirement>
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6 <requirement type="package" version="1.20.2">numpy</requirement>
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7 <requirement type="package" version="1.2.4">pandas</requirement>
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8 <requirement type="package" version="0.11.1">seaborn</requirement>
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9 </requirements>
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10
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11 <command interpreter="perl">roary_plots.sh $tree $input $heatmap
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12 </command>
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13
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14
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15 <inputs>
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16 <param format="tabular" name="input" type="data" label="Gene Presence Absence matrix"/>
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17 <param format="newick" name="tree" type="data" label="Newick"/>
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18
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19 </inputs>
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20
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21 <outputs>
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22 <data format="png" name="heatmap" label="Heatmap tree"/>
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23 </outputs>
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24
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25 <help>
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26 For full documentation, please go to the Roary plots website : https://github.com/sanger-pathogens/Roary/tree/master/contrib/roary_plots
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27
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28 </help>
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29
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30 </tool>
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