Mercurial > repos > dereeper > roary_plots

annotate Roary/bin/parallel_all_against_all_blastp @ 0:c47a5f61bc9f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author dereeper
date Fri, 14 May 2021 20:27:06 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
1 #!/usr/bin/env perl
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
2
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
3 package Bio::Roary::Main::ParallelAllAgainstAllBlastp;
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
4
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
5 # ABSTRACT: Take in a FASTA file of proteins and blast against itself
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
6 # PODNAME: parallel_all_against_all_blastp
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
7
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
8 =head1 SYNOPSIS
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
9
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
10 Take in a FASTA file of proteins and blast against itself
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
11
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
12 =cut
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
13
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
14 use Cwd qw(abs_path);
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
15 BEGIN { unshift( @INC, abs_path('./lib') ) }
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
16 BEGIN { unshift( @INC, abs_path('./t/lib') ) }
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
17 use Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp;
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
18
c47a5f61bc9f Uploaded
dereeper
parents:
diff changeset
19 Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp->new(args => \@ARGV, script_name => $0)->run;