Mercurial > repos > dereeper > roary_plots
annotate Roary/bin/protein_alignment_from_nucleotides @ 0:c47a5f61bc9f draft
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| author | dereeper |
|---|---|
| date | Fri, 14 May 2021 20:27:06 +0000 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 #!/usr/bin/env perl |
| 2 | |
| 3 package Bio::Roary::Main::GeneAlignmentFromNucleotides; | |
| 4 | |
| 5 # ABSTRACT: Take in multi-FASTA files of nucleotides and align each file with PRANK or MAFFT | |
| 6 # PODNAME: protein_alignment_from_nucleotides | |
| 7 | |
| 8 =head1 SYNOPSIS | |
| 9 | |
| 10 Take in multi-FASTA files of nucleotides and align each file with PRANK or MAFFT | |
| 11 | |
| 12 =cut | |
| 13 | |
| 14 use Cwd qw(abs_path); | |
| 15 BEGIN { unshift( @INC, abs_path('./lib') ) } | |
| 16 BEGIN { unshift( @INC, abs_path('./t/lib') ) } | |
| 17 use Bio::Roary::CommandLine::GeneAlignmentFromNucleotides; | |
| 18 | |
| 19 Bio::Roary::CommandLine::GeneAlignmentFromNucleotides->new(args => \@ARGV, script_name => $0)->run; |