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1 package Bio::Roary::Output::EMBLHeaderCommon;
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2
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3 # ABSTRACT: a role containing some common methods for embl header files
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4
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5 =head1 SYNOPSIS
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6
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7 a role containing some common methods for embl header files
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8 with 'Bio::Roary::Output::EMBLHeaderCommon';
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9
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10 =cut
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11
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12 use Moose::Role;
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13
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14 sub _header_top {
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15 my ($self) = @_;
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16 my $header_lines = 'ID Genome standard; DNA; PRO; 1234 BP.' . "\n";
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17 $header_lines .= 'XX' . "\n";
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18 $header_lines .= 'FH Key Location/Qualifiers' . "\n";
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19 $header_lines .= 'FH' . "\n";
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20 return $header_lines;
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21 }
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22
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23 sub _header_bottom {
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24 my ($self) = @_;
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25 my $header_lines = 'XX' . "\n";
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26 $header_lines .= 'SQ Sequence 1234 BP; 789 A; 1717 C; 1693 G; 691 T; 0 other;' . "\n";
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27 $header_lines .= '//' . "\n";
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28 return $header_lines;
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29 }
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30
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31 sub _annotation_type {
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32 my ( $self, $annotated_group_name ) = @_;
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33 my $annotation_type = " feature ";
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34 if ( $annotated_group_name =~ /group_/ ) {
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35 $annotation_type = " misc_feature ";
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36 }
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37 return $annotation_type;
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38 }
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39
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40
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41 1;
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