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1 #!/usr/bin/env perl
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2 use strict;
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3 use warnings;
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4 use Data::Dumper;
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5 use Cwd;
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6
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7 BEGIN { unshift( @INC, './lib' ) }
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8
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9 BEGIN {
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10 use Test::Most;
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11 use_ok('Bio::Roary::External::Makeblastdb');
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12 }
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13
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14 my $cwd = getcwd();
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15 my $obj;
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16
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17 ok($obj = Bio::Roary::External::Makeblastdb->new(
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18 fasta_file => 't/data/some_fasta_file.fa',
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19 exec => $cwd.'/t/bin/dummy_makeblastdb',
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20 mask_data => 'masking_data_file'
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21 ),'initialise object');
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22
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23 is($obj->_command_to_run, $cwd.'/t/bin/dummy_makeblastdb -in t/data/some_fasta_file.fa -dbtype prot -out '.$obj->_working_directory->dirname().'/output_contigs -logfile /dev/null', 'Command constructed as expected');
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24 ok($obj->run(), 'run dummy command');
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25
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26 unlink("output_contigs.phr");
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27 unlink("output_contigs.pin");
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28 unlink("output_contigs.psq");
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29
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30 1;
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31
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32 done_testing();
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