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comparison Roary/t/data/sequences_with_unknowns.faa @ 0:c47a5f61bc9f draft

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author dereeper
date Fri, 14 May 2021 20:27:06 +0000
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-1:000000000000 0:c47a5f61bc9f
1 >1234_00186 GGDEF family protein
2 MNFENEYDLEKLVNNSLDLLTIVDLSGNVLLVNPAFERTLGWKKEDLVGKDPFHLLHPED
3 KESTYKEFEKLNQGLLTLSFQNRYICADGQYRYFSWTASPDLVSGLVYVTGRDITDVIES
4 NRKISQLAVKLKETNDRLFEQASTDPLTKLKNRRMFNEELNNLIHACDKESHPLSLLMID
5 ADHFKDYNDKFGHIAGDKVLVELASILTKTFRKKDVLARYGGEEFIAALPNTSEPEANQI
6 AERLVQTVREFSWEKRSVTISVGITTYNFNPTSKSINSEYLLNLIEQADKALYCSKVSGR
7 XXXXXXXXXXXXXXXXXXXYYI*
8 >1234_00325 only a few unknowns so keep
9 MAFDPSVPQQQAQAPAGTLLFPEGSSANTLNVLHSGTVRYLTEVPGGRKLELFKLNGANL
10 TPGSVALFTSGRYPFHLQAEEACVISTYAMNRDTISKSVGSRVSLGLMVARTLLREITEL
11 FKKSNQIRKITSEIEKVNDNLSILYYQFNPSVFPDIKPGSPIPEVSADVVDPVMRLCREN
12 LKLFFDNGGILPDRPSPQFLEEEHESQLTRLYPEEIDFQDGEFNFIRKLVMQDPKILNVL
13 FTADPSMLAYVCSKLANVLDQISGILKTCLTDLDEAFRIFFIGENSLVEKFYLILDITSS
14 GYGTAPAEFVIPVLGAFAGKIEKYKNGHQALFGVPVANISPNTQAFQSKAVTLAKKMEET
15 APKVQAPVTSSATAGVDVDAIRKELDNSASVIIQFSGLGAEQIKEFSALMVKVKSLKNPL
16 DPEGDNRKVRRTLGRHYWDMYQECFTKYMNSNRNVPKPVELMLKYGYFDETLVDDSQIAF
17 MYTQKDPANFTSNVPISLGTEWLEKVFKREVPTSLDEMGQNFFEKVKLENRNIVIKKESD
18 IPPELDNPDTRLKFEFASLYEANVRLTSGSPATHFPILTKFHSQMAIDKSYVSKKILEEV
19 VHELMAVDYSIFHREVIYNNNELGITKEFIQKCVIPDFILVPSIGTKVMMWQDLSIHRGA
20 GSKESPGRIVLPIFAQGDLKTMVADALAAFRWELTKSILGAEWNNVGNPSITADYTDYIQ
21 FFKKNKDLSMEIKEKLASDFKRFRNDRDIFANDYQLWMKYEADGVQRLNKVVRGIFYRHI
22 PFSKQVRDKVAXXXXXXXXXXXXXLLPLQRSITDLLILEIENILK*
23 >1234_00377 Uncharacterized protein conserved in bacteria
24 MTLNEFAKNVLFGSGLEDKLFSPPVHPVDIRSFDFLNVPSLPAREKKIQISEQKSKIPRL
25 EQLFNEENRIITLHHFANHELMAIELFAWAILKFQDAPSSIRFGLYRTLLEEQTHLKMYL
26 SEMKKGGMELGDRPLNFIFWKQVPKMQTLEKFXXXXXXXXXXXXXXXXXF*