Mercurial > repos > dereeper > roary_plots
view Roary/t/Bio/Roary/External/CheckTools.t @ 3:e95344f6dfc5 draft default tip
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author | dereeper |
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date | Fri, 12 Nov 2021 16:32:26 +0000 |
parents | c47a5f61bc9f |
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#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Cwd; use Test::Output; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::External::CheckTools'); } ok( my $check_tools = Bio::Roary::External::CheckTools->new(), 'initialise checking for tools' ); for my $tool ( ( 'parallel', 'blastp', 'makeblastdb', 'mcl', 'bedtools', 'prank', 'mafft', 'grep', 'sed', 'awk', ) ) { my $pattern = "Looking for '$tool' - found "; stderr_like { $check_tools->check_tool($tool); } qr/$pattern/, "Check for $tool"; } stderr_like { $check_tools->check_all_tools; } qr/Looking for /, "Check for all tools"; 1; done_testing();