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1 #!/bin/bash
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2
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3 tool_path=$(dirname $0)
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4 ped=$1
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5 map=$2
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6 fileout_label=$3
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7 fileout_matrix=$4
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8 fileout_plot=$5
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9 fileout_log=$6
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10
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11 rsync -a $ped input.ped
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12 rsync -a $map input.map
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13
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14 perl $tool_path/MDSbasedOnIBSmatrix.pl --in input --out $fileout_label
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15
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16 rm -f input.ped input.map
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17
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18 cp $fileout_label.ibs_matrix.txt $fileout_matrix
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19 cp $fileout_label.mds_plot.txt $fileout_plot
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20 cp input.plink.log $fileout_log
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21
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22
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23 rm -f $fileout_label.ibs_matrix.txt $fileout_label.mds_plot.txt input.plink.log
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