Mercurial > repos > dereeper > sniplay

annotate SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF.sh @ 12:88748d846a20 draft

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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
author dereeper
date Tue, 14 Aug 2018 08:21:55 -0400
parents ebb0ac9b6fa9
children
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1 #!/bin/bash
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2
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3 tool_path=$(dirname $0)
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4 input=$1
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5 fileout=$2
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6 fileout_bysample=$3
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7 step=$4
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8
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9 perl $tool_path/CalculateSlidingWindowsSNPdensitiesFromVCF.pl -i $input -o $fileout -s $step
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10
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11 cp $fileout.by_sample $fileout_bysample
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12 rm $fileout.by_sample
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