Mercurial > repos > dereeper > sniplay

view SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF.sh @ 12:88748d846a20 draft

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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
author dereeper
date Tue, 14 Aug 2018 08:21:55 -0400
parents ebb0ac9b6fa9
children
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#!/bin/bash

tool_path=$(dirname $0)
input=$1
fileout=$2
fileout_bysample=$3
step=$4

perl $tool_path/CalculateSlidingWindowsSNPdensitiesFromVCF.pl -i $input -o $fileout -s $step

cp  $fileout.by_sample $fileout_bysample
rm $fileout.by_sample