Mercurial > repos > dereeper > sniplay
annotate check_gwas_inputs/CheckGWASInputs.sh @ 12:88748d846a20 draft
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
| author | dereeper |
|---|---|
| date | Tue, 14 Aug 2018 08:21:55 -0400 |
| parents | 98c37a5d67f4 |
| children |
| rev | line source |
|---|---|
| 9 | 1 #!/bin/bash |
| 2 hapmap=$1 | |
| 3 trait=$2 | |
| 4 out_hapmap=$3 | |
| 5 out_trait=$4 | |
| 6 stats=$5 | |
| 7 | |
| 8 directory=`dirname $0` | |
| 9 mkdir tmpdir$$ | |
| 10 #cp -rf $input tmpdir$$/input | |
| 11 | |
| 12 perl $directory/CheckGWASInputs.pl -h $hapmap -t $trait -o tmpdir$$/out >>$stats 2>&1 | |
| 13 | |
| 14 ls | |
| 15 ls tmpdir$$/ | |
| 16 | |
| 17 mv tmpdir$$/out.hapmap $out_hapmap | |
| 18 mv tmpdir$$/out.trait $out_trait | |
| 19 | |
| 20 |