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comparison egglib/CalculateDiversityIndexes.xml @ 4:10627af23f10 draft

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planemo upload
author gandres
date Tue, 15 Dec 2015 05:18:02 -0500
parents 420b57c3c185
children
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3:345f88a8f483 4:10627af23f10
1 <tool id="calculate_diversity" name="Diversity by gene" version="2.1.6"> 1 <tool id="calculate_diversity" name="Diversity by gene" version="2.1.6">
2 <description>calculates various diversity indexes with EggLib.</description> 2 <description>calculates various diversity indexes with EggLib.</description>
3 <command interpreter="bash">./CalculateDiversityIndexes.sh $input $output $log 3 <!-- [STRONGLY RECOMMANDED] Exit code rules -->
4 <stdio>
5 <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
6 <exit_code range="1:" level="fatal" />
7 </stdio>
8 <command interpreter="bash">./CalculateDiversityIndexes.sh $input $output $log
4 </command> 9 </command>
5 <inputs> 10 <inputs>
6 <param format="fasta" name="input" type="data" label="Fasta alignment" help="..."/> 11 <param format="fasta" name="input" type="data" label="Fasta alignment" help="..."/>
7 </inputs> 12 </inputs>
8 <outputs> 13 <outputs>
9 <data format="txt" name="output" label="Diversity"/> 14 <data format="txt" name="output" label="Diversity"/>
10 <data format="txt" name="log" label="Logfile"/> 15 <data format="txt" name="log" label="Logfile"/>
11 </outputs> 16 </outputs>
12 <!-- [STRONGLY RECOMMANDED] Exit code rules -->
13 <stdio>
14 <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
15 <exit_code range="1:" level="fatal" />
16 </stdio>
17 17
18 <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin --> 18 <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
19 <tests> 19 <tests>
20 <!-- [HELP] Test files have to be in the ~/test-data directory --> 20 <!-- [HELP] Test files have to be in the ~/test-data directory -->
21 <!-- [HELP] Multiple tests can be defined with different parameters --> 21 <!-- [HELP] Multiple tests can be defined with different parameters -->
22 <!--
23 <test> 22 <test>
23 <param name="input" value="egglib-alignment.fa" />
24 <output name="output" file="egglib-result.txt" />
24 </test> 25 </test>
25 -->
26 </tests> 26 </tests>
27 <help> 27 <help>
28 28
29 29
30 30