Mercurial > repos > dereeper > sniplay
comparison check_gwas_inputs/CheckGWASInputs.sh @ 9:98c37a5d67f4 draft
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| author | dereeper |
|---|---|
| date | Wed, 07 Feb 2018 22:08:47 -0500 |
| parents | |
| children |
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| 8:6bf69b40365c | 9:98c37a5d67f4 |
|---|---|
| 1 #!/bin/bash | |
| 2 hapmap=$1 | |
| 3 trait=$2 | |
| 4 out_hapmap=$3 | |
| 5 out_trait=$4 | |
| 6 stats=$5 | |
| 7 | |
| 8 directory=`dirname $0` | |
| 9 mkdir tmpdir$$ | |
| 10 #cp -rf $input tmpdir$$/input | |
| 11 | |
| 12 perl $directory/CheckGWASInputs.pl -h $hapmap -t $trait -o tmpdir$$/out >>$stats 2>&1 | |
| 13 | |
| 14 ls | |
| 15 ls tmpdir$$/ | |
| 16 | |
| 17 mv tmpdir$$/out.hapmap $out_hapmap | |
| 18 mv tmpdir$$/out.trait $out_trait | |
| 19 | |
| 20 |