--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/MDSplot/mdsplot.sh	Mon Mar 23 05:57:27 2015 -0400
@@ -0,0 +1,23 @@
+#!/bin/bash
+
+tool_path=$(dirname $0)
+ped=$1
+map=$2
+fileout_label=$3
+fileout_matrix=$4
+fileout_plot=$5
+fileout_log=$6
+
+rsync -a $ped input.ped 
+rsync -a $map input.map
+
+perl $tool_path/MDSbasedOnIBSmatrix.pl --in input --out $fileout_label
+
+rm -f input.ped input.map
+
+cp $fileout_label.ibs_matrix.txt $fileout_matrix
+cp $fileout_label.mds_plot.txt $fileout_plot
+cp input.plink.log $fileout_log
+
+
+rm -f $fileout_label.ibs_matrix.txt $fileout_label.mds_plot.txt input.plink.log