Mercurial > repos > dereeper > sniplay

diff SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF.sh @ 6:ebb0ac9b6fa9 draft

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planemo upload
author gandres
date Mon, 23 May 2016 17:49:17 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF.sh	Mon May 23 17:49:17 2016 -0400
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+tool_path=$(dirname $0)
+input=$1
+fileout=$2
+fileout_bysample=$3
+step=$4
+
+perl $tool_path/CalculateSlidingWindowsSNPdensitiesFromVCF.pl -i $input -o $fileout -s $step
+
+cp  $fileout.by_sample $fileout_bysample
+rm $fileout.by_sample
+