Mercurial > repos > dereeper > sniplay

view SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF.sh @ 6:ebb0ac9b6fa9 draft

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planemo upload
author gandres
date Mon, 23 May 2016 17:49:17 -0400
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#!/bin/bash

tool_path=$(dirname $0)
input=$1
fileout=$2
fileout_bysample=$3
step=$4

perl $tool_path/CalculateSlidingWindowsSNPdensitiesFromVCF.pl -i $input -o $fileout -s $step

cp  $fileout.by_sample $fileout_bysample
rm $fileout.by_sample