Mercurial > repos > dereeper > sniplay

view SNP_density/calculateSlidingWindowsSNPdensitiesFromHapmap.sh @ 5:ec22fcacb66c draft

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planemo upload
author gandres
date Mon, 15 Feb 2016 10:26:18 -0500
parents 420b57c3c185
children
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#!/bin/bash

tool_path=$(dirname $0)
hapmap=$1
fileout=$2
fileout_bysample=$3
step=$4

perl $tool_path/CalculateSlidingWindowsSNPdensitiesFromHapmap.pl -i $hapmap -o $fileout -s $step

cp  $fileout.by_sample $fileout_bysample
rm $fileout.by_sample