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1
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1
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2 VCFtools - v0.1.12b
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3 (C) Adam Auton and Anthony Marcketta 2009
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4
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5 Parameters as interpreted:
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6 --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat
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7 --het
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8 --out vcf_stats
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9 --remove-filtered-all
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10
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11 After filtering, kept 1 out of 1 Individuals
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12 Outputting Individual Heterozygosity
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13 Individual Heterozygosity: Only using biallelic SNPs.
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14 After filtering, kept 4813 out of a possible 4955 Sites
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15 Run Time = 0.00 seconds
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16
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17 VCFtools - v0.1.12b
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18 (C) Adam Auton and Anthony Marcketta 2009
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19
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20 Parameters as interpreted:
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21 --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat
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22 --out vcf_stats
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23 --TsTv-summary
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24 --remove-filtered-all
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25
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26 After filtering, kept 1 out of 1 Individuals
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27 Outputting Ts/Tv summary
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28 Ts/Tv ratio: 1.883
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29 After filtering, kept 4813 out of a possible 4955 Sites
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30 Run Time = 0.00 seconds
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31
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32 VCFtools - v0.1.12b
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33 (C) Adam Auton and Anthony Marcketta 2009
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34
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35 Parameters as interpreted:
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36 --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat
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37 --missing-indv
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38 --out vcf_stats
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39 --remove-filtered-all
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40
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41 After filtering, kept 1 out of 1 Individuals
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42 Outputting Individual Missingness
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43 After filtering, kept 4813 out of a possible 4955 Sites
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44 Run Time = 0.00 seconds
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