Mercurial > repos > dereeper > sniplay3_complete_workflow

annotate Galaxy-Workflow-SNiPlay.ga @ 1:0bf2b08766d9 draft

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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
author dereeper
date Tue, 14 Aug 2018 08:47:50 -0400
parents b9f2901a4b00
children 0c7db2dca8b4
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1 {
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2 "a_galaxy_workflow": "true",
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3 "annotation": "",
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4 "format-version": "0.2",
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5 "name": "SNiPlay Workflow",
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6 "steps": {
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7 "0": {
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8 "annotation": "",
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13 "inputs": [],
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14 "label": "Input VCF",
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15 "name": "Input dataset",
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16 "outputs": [],
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17 "position": {
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22 "tool_state": "{}",
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24 "type": "data_input",
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25 "uuid": "6cadf2e0-c934-40e9-b7da-6617917bad24",
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26 "workflow_outputs": []
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27 },
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28 "1": {
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34 "inputs": [],
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35 "label": "Input Fasta Reference",
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36 "name": "Input dataset",
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37 "outputs": [],
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38 "position": {
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42 "tool_id": null,
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43 "tool_state": "{}",
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45 "type": "data_input",
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46 "uuid": "253e89d3-c948-419e-af50-f8c8a448af00",
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47 "workflow_outputs": []
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48 },
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49 "2": {
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50 "annotation": "",
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53 "id": 2,
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54 "input_connections": {},
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55 "inputs": [],
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56 "label": "Input GFF Annotation,
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57 "name": "Input dataset",
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58 "outputs": [],
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62 },
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63 "tool_id": null,
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64 "tool_state": "{}",
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66 "type": "data_input",
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67 "uuid": "c83428cf-c1d4-47a2-98ff-721de1e99d22",
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68 "workflow_outputs": []
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69 },
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70 "3": {
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71 "annotation": "",
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72 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0",
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73 "errors": null,
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75 "input_connections": {
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76 "input": {
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77 "id": 0,
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78 "output_name": "output"
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79 }
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80 },
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81 "inputs": [
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82 {
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83 "description": "runtime parameter for tool VCFtools Filter",
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84 "name": "input"
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85 }
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86 ],
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87 "label": null,
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88 "name": "VCFtools Filter",
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89 "outputs": [
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90 {
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91 "name": "fileout",
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92 "type": "vcf"
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93 },
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94 {
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95 "name": "fileout_map",
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96 "type": "tabular"
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97 },
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98 {
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99 "name": "filelog",
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100 "type": "txt"
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101 }
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102 ],
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103 "position": {
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104 "left": 411,
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106 },
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107 "post_job_actions": {},
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108 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/vcftools_filter_stats_diversity/sniplay_vcftoolsfilter/2.0.0",
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109 "tool_shed_repository": {
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110 "changeset_revision": null,
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111 "name": "vcftools_filter_stats_diversity",
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112 "owner": "dereeper",
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113 "tool_shed": "toolshed.g2.bx.psu.edu"
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114 },
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115 "tool_state": "{\"nb_alleles_min\": \"\\\"2\\\"\", \"chromosomes\": \"\\\"\\\"\", \"__page__\": null, \"nb_alleles_max\": \"\\\"4\\\"\", \"type_p\": \"\\\"ALL\\\"\", \"allow_missing\": \"\\\"0.0\\\"\", \"fileout_label\": \"\\\"filtered\\\"\", \"frequency\": \"\\\"0.001\\\"\", \"export\": \"\\\"VCF\\\"\", \"samples\": \"\\\"\\\"\", \"bound_end\": \"\\\"100000000\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"max_freq\": \"\\\"0.5\\\"\", \"__rerun_remap_job_id__\": null, \"bound_start\": \"\\\"1\\\"\"}",
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116 "tool_version": "2.0.0",
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117 "type": "tool",
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118 "uuid": "631d47f0-20d4-43b2-9201-df377902566b",
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119 "workflow_outputs": []
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120 },
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849 "filein": {
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850 "id": 16,
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851 "output_name": "outputTree"
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852 }
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853 },
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854 "inputs": [],
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855 "label": null,
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856 "name": "Rooting",
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857 "outputs": [
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858 {
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859 "name": "fileout_log",
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860 "type": "txt"
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861 },
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862 {
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863 "name": "fileout",
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parents: 0
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864 "type": "nhx"
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865 }
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866 ],
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867 "position": {
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868 "left": 1296,
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869 "top": 798
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870 },
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871 "post_job_actions": {},
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872 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/sniplay/sniplay_rooting/2.0.0",
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873 "tool_shed_repository": {
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874 "changeset_revision": null,
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875 "name": "sniplay",
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876 "owner": "dereeper",
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877 "tool_shed": "toolshed.g2.bx.psu.edu"
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878 },
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879 "tool_state": "{\"fileout_label\": \"\\\"out tree\\\"\", \"__page__\": null, \"__rerun_remap_job_id__\": null, \"filein\": \"{\\\"values\\\": [{\\\"src\\\": \\\"hda\\\", \\\"id\\\": 36319}]}\"}",
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880 "tool_version": "2.0.0",
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881 "type": "tool",
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882 "uuid": "ded86308-97bc-4580-adf1-23b1cc86c302",
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883 "workflow_outputs": []
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884 }
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885 },
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886 "tags": [],
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887 "uuid": "f3ca58e0-87e5-4314-906e-9d2d34f95dc8"
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888 }