Mercurial > repos > dereeper > tassel5

changeset 11:75948ef196f9 draft

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Uploaded
author dereeper
date Wed, 03 Jan 2024 10:22:35 +0000
parents 8dca3a43f177
children 4ca9252178df
files tassel.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tassel.xml	Wed Jan 03 09:31:49 2024 +0000
+++ b/tassel.xml	Wed Jan 03 10:22:35 2024 +0000
@@ -2,7 +2,7 @@
 	<description>Software to evaluate traits associations, evolutionary patterns, and linkage disequilibrium</description>
 	<requirements>
 				<requirement type="package" version="5.2.89">tassel</requirement>
-				<requirement type="package" version="1.8.0.242.b08">openjdk</requirement>
+				<requirement type="package" version="1.8.0.242.b08">java-1.8.0-openjdk-devel-cos7-s390x</requirement>
         </requirements>
 ​
     <stdio>
@@ -10,7 +10,7 @@
         <exit_code range="1:" level="fatal" />
     </stdio>
 ​
-	<command detect_errors="exit_code"><![CDATA[./tassel.sh $analysis_opts.fonction_selector $output1 $output2 $output3 $log tmpdir$$/
+	<command>tassel.sh $analysis_opts.fonction_selector $output1 $output2 $output3 $log tmpdir$$/
 #if $analysis_opts.fonction_selector == "mlm":
  -fork1 -h $hapmap -filterAlign -filterAlignMinFreq $filterAlignMinFreq
  -fork2 -r $analysis_opts.trait
@@ -49,7 +49,7 @@
  -fork1 -h $hapmap
  -ck -export tmpdir$$/kinship -runfork1
 #end if
-	]]></command>
+	</command>
 	<inputs>
 		<param format="txt" name="hapmap" type="data" label="HapMap file"/>
 		<conditional name="analysis_opts">