Mercurial > repos > dereeper > tassel5
changeset 16:d9c73778f0e2 draft
Deleted selected files
| author | dereeper |
|---|---|
| date | Mon, 22 Jan 2024 13:31:02 +0000 |
| parents | 88ea6f8f664e |
| children | 93bccb57e4f4 |
| files | tassel.sh |
| diffstat | 1 files changed, 0 insertions(+), 46 deletions(-) [+] |
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--- a/tassel.sh Tue Jan 16 10:59:25 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,46 +0,0 @@ -#!/bin/bash - -analyseType=$1; -out1=$2; -out2=$3; -out3=$4; -log1=$5; -galaxyOutDir=$6; - -version=$(java -version 2>&1 | grep version) - -mkdir $galaxyOutDir - -# Suppression des 6 premiers arguments de la liste des arguments $@ -shift; shift; shift; shift; shift; shift; - - -if [[ $analyseType == glm ]] -then - run_pipeline.pl $* >> $log1 2>&1 - mv "$galaxyOutDir/TASSELGLM1.txt" $out1 - if [ $? -gt 0 ] ; then exit 1 ; fi ##check the run of commands - mv "$galaxyOutDir/TASSELGLM2.txt" $out2 -fi - -if [[ $analyseType == mlm ]] -then - run_pipeline.pl $* >> $log1 2>&1 - mv "$galaxyOutDir/TASSELMLM1.txt" $out1 - if [ $? -gt 0 ] ; then exit 1 ; fi ##check the run of commands - mv "$galaxyOutDir/TASSELMLM2.txt" $out2 - mv "$galaxyOutDir/TASSELMLM3.txt" $out3 -fi - -if [[ $analyseType == ld ]] -then - run_pipeline.pl $* >> $log1 2>&1 -fi - - -if [[ $analyseType == ck ]] -then - run_pipeline.pl $* >> $log1 2>&1 - mv "$galaxyOutDir/kinship.txt" $out1 - if [ $? -gt 0 ] ; then exit 1 ; fi ##check the run of commands -fi