blast_datatypes: test-data/blastx

author	peterjc
date	Thu, 20 Sep 2012 10:12:43 -0400
parents
children

rev	line source
2 45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	1 <?xml version="1.0"?>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd">
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	3 <BlastOutput>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	4 <BlastOutput_program>blastx</BlastOutput_program>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	5 <BlastOutput_version>BLASTX 2.2.24+</BlastOutput_version>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	7 <BlastOutput_db>/share/BlastDB/nr</BlastOutput_db>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	9 <BlastOutput_query-def>phage_suis</BlastOutput_query-def>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	10 <BlastOutput_query-len>1890</BlastOutput_query-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	11 <BlastOutput_param>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	12 <Parameters>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	14 <Parameters_expect>0.001</Parameters_expect>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	15 <Parameters_gap-open>11</Parameters_gap-open>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	16 <Parameters_gap-extend>1</Parameters_gap-extend>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	17 <Parameters_filter>L;</Parameters_filter>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	18 </Parameters>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	19 </BlastOutput_param>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	20 <BlastOutput_iterations>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	21 <Iteration>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	22 <Iteration_iter-num>1</Iteration_iter-num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	23 <Iteration_query-ID>Query_1</Iteration_query-ID>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	24 <Iteration_query-def>phage_suis</Iteration_query-def>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	25 <Iteration_query-len>1890</Iteration_query-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	26 <Iteration_hits>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	27 <Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	28 <Hit_num>1</Hit_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	29 <Hit_id>gi\|119953746\|ref\|YP_950551.1\|</Hit_id>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	30 <Hit_def>tail tape measure protein [Streptococcus phage SMP] >gi\|118430558\|gb\|ABK91882.1\| tail tape measure protein [Streptococcus phage SMP]</Hit_def>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	31 <Hit_accession>YP_950551</Hit_accession>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	32 <Hit_len>659</Hit_len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	33 <Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	34 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	35 <Hsp_num>1</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	36 <Hsp_bit-score>988.407949172964</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	37 <Hsp_score>2554</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	38 <Hsp_evalue>0</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	39 <Hsp_query-from>336</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	40 <Hsp_query-to>1889</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	41 <Hsp_hit-from>25</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	42 <Hsp_hit-to>542</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	43 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	44 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	45 <Hsp_identity>518</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	46 <Hsp_positive>518</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	47 <Hsp_gaps>0</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	48 <Hsp_align-len>518</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	49 <Hsp_qseq>NWFHLLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	50 <Hsp_hseq>NWFHLLNSGGSALSVMFAKLVGIIAGISAPIWAVIGVIAALVAGFVLLYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	51 <Hsp_midline>NWFHLLNSGGSALSVMFAKLVGIIAGISAPIWAVIGVIAALVAGFVLLYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	52 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	53 </Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	54 </Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	55 <Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	56 <Hit_num>2</Hit_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	57 <Hit_id>gi\|289551554\|ref\|YP_003472458.1\|</Hit_id>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	58 <Hit_def>Phage tail length tape-measure protein [Staphylococcus lugdunensis HKU09-01] >gi\|289181085\|gb\|ADC88330.1\| Phage tail length tape-measure protein [Staphylococcus lugdunensis HKU09-01]</Hit_def>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	59 <Hit_accession>YP_003472458</Hit_accession>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	60 <Hit_len>1220</Hit_len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	61 <Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	62 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	63 <Hsp_num>1</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	64 <Hsp_bit-score>256.91395450591</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	65 <Hsp_score>655</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	66 <Hsp_evalue>5.97108392092708e-66</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	67 <Hsp_query-from>342</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	68 <Hsp_query-to>1889</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	69 <Hsp_hit-from>657</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	70 <Hsp_hit-to>1106</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	71 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	72 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	73 <Hsp_identity>170</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	74 <Hsp_positive>254</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	75 <Hsp_gaps>66</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	76 <Hsp_align-len>516</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	77 <Hsp_qseq>FHLLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	78 <Hsp_hseq>FTLLFGKASLVRTVFGLLVGVFTSLSAPVLAVIAVIGSLVAIFVYLWKTNDGFREACINAWNVIKTTVSTVVTVIVAFVKSIWGGLVAWWQQNHVLIQAAATVVWNAIKTVIMTVMNALGPSMKTAWEVIKQAVIIVWEFIKTYVQVAIAVVSGVIKTVMQLITGDWSGAWNTIKQTAMTVWNLIKS-------GATAIFNA----LKVALSAIWNAIKSAASGAWNDMKAVIVAAVNYIKNRVQAQWNTLKAITTGVWNGIKAVISAVWNAIKSFVTSSVSKVKSSVSSGFNSVRNV-------VRSVMSA---------------VKSFISSAWNGVKSIVSGAVGAVKSFVSSGFNAVRNTVSSIMSRVKGIISSI-----------WNSIKSTVSNAVHNMTSA----------------------MSSGMSRMGSAVHSGMSRVSSAVRNGISGAYNAVRGGVYRMVSAGADLARGIARGIMNMAGYVMSRARALASRAVSAIKSALRIHS</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	79 <Hsp_midline>F LL S + +F LVG+ +SAP+ AVI VI +LVA FV L+ TN+ FR AW IK+ +ST V +V+FV +WG +VAWW +N LI+ A VWNAI+TV+ TVM AL P ++TAW++I V V IKT V + VV G+IK VMQ+I GDWSGAW T+K A T+W IKS G IF LK +W I + W+ +K + A+ + +Q +++ VWN I V S +W AI + V S ++ + + + ++ V +++V +A +K IS+AW +K+ S A+ +F+S + ++ S+ +K IS++ WN+IK+++SNA++N+ SA +S+G + + S V + R+ SAVR G A NA R + +S G DL G G+ AG ++ S A+ K L I S</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	80 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	81 </Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	82 </Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	83 <Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	84 <Hit_num>3</Hit_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	85 <Hit_id>gi\|223044325\|ref\|ZP_03614360.1\|</Hit_id>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	86 <Hit_def>phage tape measure protein [Staphylococcus capitis SK14] >gi\|222442293\|gb\|EEE48403.1\| phage tape measure protein [Staphylococcus capitis SK14]</Hit_def>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	87 <Hit_accession>ZP_03614360</Hit_accession>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	88 <Hit_len>1320</Hit_len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	89 <Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	90 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	91 <Hsp_num>1</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	92 <Hsp_bit-score>252.67675917082</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	93 <Hsp_score>644</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	94 <Hsp_evalue>1.12609769207128e-64</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	95 <Hsp_query-from>393</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	96 <Hsp_query-to>1889</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	97 <Hsp_hit-from>655</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	98 <Hsp_hit-to>1193</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	99 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	100 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	101 <Hsp_identity>165</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	102 <Hsp_positive>275</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	103 <Hsp_gaps>54</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	104 <Hsp_align-len>546</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	105 <Hsp_qseq>LVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTA---ETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLV---------------QVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVG-------PIWDWIKTT-------VSNAITAVWEIIQNIMTSIQTTW----DTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVS-----------AVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	106 <Hsp_hseq>LGGVLAALSGPVGIVIAAVAAVIAIFVALWNSSETLRNALTDAWNAIASSVGAAIQAVLGFLGDLFGRA-------QEILAPLAPMFQQVWSQIVAIVDTAVNVIAPMVKQAFNTVVAVVKVAWEIIKAVIKISMEVILSTIVALLQLLTGDWRGAWQTMSKAGAEIWKAIVEMAKNIWSILGDYLKQSWQNIVDGFSAIFGPLAGIAGSIWNGIVNIVKTVVSGLGAFLTSIWTAIVTSAQVQWSIIATVAQTIWSAIVNVIVTVVTTLVSILATIWTTIVTVASTIWTTLVTVSQTIWTIIVTTITTIVTTLGTILSAIWTGIVTVATTIWTTLVTVAQTIWTLIVTTITTIISTLVTIITTVWTTIVSVTSTIWSSLVAIAQTIWSSVLSIISGIVGVIVAIVTGNWSLLRSSTASIMSGIAGLISAVWNSITSVISSAVSNAVSTAVSGFFNMLSSIGSAMHGIVSSVLSGMMSVVNSVRSGVSNALSAVRNFIGHFTQAGTDLIMGMVNGIKNAAINVVNAAKGVASSAINAVRSVLNSHS</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	107 <Hsp_midline>L G++A +S P+ VI +AA++A FV L+N++E R + AW AI S++ A++AV+ F+ DL+G+ QE++ A + VW+ I +V+T + + P+V+ A++ ++AVV +IK V+ ++V+L I A++Q++ GDW GAW+T+ IW+ I + Q +DG IF SIW+ + + VV IW I T+ ++ +W I N++ ++ TT T+W I TVAS IWT + T ++ T I I T + + T+ SA W I V I T+V + + LI I+ + T + +W I + S IW + A T W + + IS ++ I + + W+ +++S ++ ++ I WN+I S IS+A+ N ST +G+ N++S++ +A IVS +VR+G NA++A RNFI + G DLI G V G+K AA +++A G S AI+ + +L S</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	108 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	109 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	110 <Hsp_num>2</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	111 <Hsp_bit-score>130.568493605019</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	112 <Hsp_score>327</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	113 <Hsp_evalue>6.45396672852224e-28</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	114 <Hsp_query-from>384</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	115 <Hsp_query-to>1796</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	116 <Hsp_hit-from>844</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	117 <Hsp_hit-to>1309</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	118 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	119 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	120 <Hsp_identity>101</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	121 <Hsp_positive>215</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	122 <Hsp_gaps>79</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	123 <Hsp_align-len>508</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	124 <Hsp_qseq>FAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVM----QMINGDWSG-------AWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMS-VLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKS--------------------NIETAWNNIKTSISNALNNIKSAAENAWNNIKSAI--STAIENIKSTVSNG---WNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEG</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	125 <Hsp_hseq>FSAIFGPLAGIAGSI-------------------------------WNGIVNIVKTVVSGLGAFLTSIWTAIVTSAQVQWSIIATVAQTIWSAIVNVIVTVVTTLVSILATIWTTIVTVASTIWTTLVTVSQTIWTIIVTTITTIVTTLGTILSAIWTGIVTVATTIWTTLVTVAQTIWTLIVTTITTIISTLVTIITTVWTTIVSVTSTIWSSLVAIAQTIWSSVLSIISGIVGVIVAIVTGNWSLLRSSTASIMSGIAGLISAVWNSITSVISSAVSNAVSTAVSGFFNMLSSIGSAMHGIVSSVLSGMMSVV--------NSVRSGVSNALSAVRNFIGHFTQAGTDLIMGMVNGIKNAAINVVNAAKGVASSAINAVRSVLNSHSPSRVMMGIGGDFGEGFKIGIDDKKKSVANIAGGLGSSAVKA---VKNAVNPTDVLSDVRSTLKNSNLKIPNIQGDIKNASASANANITHTHEYKTNPSQRVVTVQMDVNNDALTHIVNG</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	126 <Hsp_midline>F+ + G +AGI+ I W I + + T V + +F+ +W +V +I A+T+W+AI V+ TV+T L+ I+ T W I+ V +T+ + TV T +++ I ++ +++ W+G W TL VA TIW I + + I LV I T + S+ T+W +++A+ IW + + +S + + I+ + ++++ ++ + I+ + S +W +I++ + S V + + + ++ ++ SA I+ +V + ++ + + ++ +SNA ++ A T + G+ GIK AA K S+ + ++S + ++ K S++N + S+A A +K+A+ + + +++ST+ N N+ + NA + + + N ++ ++ + V D + V G</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	127 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	128 </Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	129 </Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	130 <Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	131 <Hit_num>4</Hit_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	132 <Hit_id>gi\|268611153\|ref\|ZP_06144880.1\|</Hit_id>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	133 <Hit_def>hypothetical protein RflaF_16865 [Ruminococcus flavefaciens FD-1]</Hit_def>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	134 <Hit_accession>ZP_06144880</Hit_accession>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	135 <Hit_len>1158</Hit_len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	136 <Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	137 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	138 <Hsp_num>1</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	139 <Hsp_bit-score>239.194774013712</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	140 <Hsp_score>609</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	141 <Hsp_evalue>1.28842161409548e-60</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	142 <Hsp_query-from>78</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	143 <Hsp_query-to>1847</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	144 <Hsp_hit-from>440</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	145 <Hsp_hit-to>1042</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	146 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	147 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	148 <Hsp_identity>183</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	149 <Hsp_positive>291</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	150 <Hsp_gaps>85</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	151 <Hsp_align-len>639</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	152 <Hsp_qseq>NLVAGLGQKDADIKGLLSNLGETIQNFVRNVKNVVLTIWDNL-PLAPWQKW----LGLIAVAAGPFLMLLGXXXXXXXXXXXXXXXXXXXXNWFHLLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVW-----------NAISTVASNIWTAISTTVMSVLTTIWGYIQT---------------YLELIKTVWSA------------------AWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVS</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	153 <Hsp_hseq>NLGGQLTILKSQLQELAISFGEILMPAIRAIVSKIQGFIDKLNAMDPATKETIVKIALVAAALGPLLVVVGKTMVGVGKLMQLVANLPT-------IIAGAKAAFTSFGAAIG---GISAPVVAVIAVVAALVAAFVHLWRTNEDFRNKITAIWNQIKSIFDNFCQGIVDRVNAL--------GFDFKNISEVIKAVWDGL-------CKFLAPVFE-------GVFQQVANIFKAVTD----IILNILDIFVGIFTGDWSRVWDGIKGIFVAVWNFLKDTLKNYLNVLCNLFGTNLDEVKEFWVNVWTSIKNFFVNIWNGIKNFITGVVNAIKNFFTTIWTGIKNFFVGIWTAIYNSVAEKINLIKTVITVVWNAIHTAISMVLNAIWNVISTVWQTIYDFISPLLEAFRYLFETIFEAIHVIISRVMDWIHEKITTAWENIKAVVTIVLEAIKSVIETVWNAIHTAITTVMDAISNVISTVWNAISSFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVLNTISSVVSSIWNGIKNTVTNILNTIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNFIKNLASQAFQWGADIINGIVNGIKNCIGKVADAVKGVAN</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	154 <Hsp_midline>NL L + ++ L + GE + +R + + + D L + P K + L+A A GP L+++G + ++ + + + + +G A F +G GISAP+ AVI V+AALVA FV L+ TNE+FR K+ A W IKS + +V V L + + I + + VW+ + L P+ + V V N+ K V D ++L I+ + + GDWS W+ +KG+ +W +K ++ ++ L +F T L +K W VW +I IW+ IK ++ + A+ I T I+ + +W N I TV + +W AI T + VL IW I T + L +T++ A AWE IKAV +L I ++ ++ I AI+ + I S +WNAI++F+SG+ I + S+ W IK I+N + I + + WN I IS LN I S + WN IK+ ++ + IK+TVSN W+++ + VT I + GF+ AVN +N S A G D+ING V G+K G++ DAV G +</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	155 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	156 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	157 <Hsp_num>2</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	158 <Hsp_bit-score>141.354081730704</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	159 <Hsp_score>355</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	160 <Hsp_evalue>3.65629455324605e-31</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	161 <Hsp_query-from>543</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	162 <Hsp_query-to>1856</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	163 <Hsp_hit-from>547</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	164 <Hsp_hit-to>938</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	165 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	166 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	167 <Hsp_identity>103</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	168 <Hsp_positive>183</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	169 <Hsp_gaps>52</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	170 <Hsp_align-len>441</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	171 <Hsp_qseq>ISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNL---VSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAI</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	172 <Hsp_hseq>ISAPVVAVIAVVAALVAAFVHLWRTNEDF-RNKITAIWNQIKSIFDNFCQGIVDRVNA-------------------LGFDFKNISEVIKAV-------WDGLCKFLAPVFEGVFQQVANIFKAVTDIILNILDIFVGIFTGDWSRVWDGIKGIFVAVWNFLKDTLKNYLNVLCNLFGTNLDEVKEFWVNVWTSIKNFFVNIWNGIKNFITGVVNAI-----------KNFFTTIWTGIKNFF-------VGIWTAIYNSVAEKIN----LIKTVITVVWNAIHTAISMVLNAIWNVISTVWQTIYDFISPLLEAFRYLFETIFEAIHVIISRVMDWIHEKITTAWENIKAVVTIVLEAIKSVIETVWNAIHTAITTVMDAISNVISTVWNAISSFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFI</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	173 <Hsp_midline>IS V AV++ V L V W N++ R +WN I+++ + ++ V + K + +IKAV W G + L V +++ + ++ + D ++ I + W VW I + +W+++K T+ N + + + + ++ W VW +I NIW I + V+ I K ++ W IK F VG+ T ++ + + I+ +IKT + +WNAI T +S + I ST W+ I IS ++ + ET + I IS ++ I AW NIK+ ++ +E IKS + WN + ++TV +A ++S V + ++ N I + IS + I + A ++ AV A+SG I</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	174 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	175 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	176 <Hsp_num>3</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	177 <Hsp_bit-score>140.198483002952</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	178 <Hsp_score>352</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	179 <Hsp_evalue>8.14537447802119e-31</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	180 <Hsp_query-from>522</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	181 <Hsp_query-to>1844</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	182 <Hsp_hit-from>722</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	183 <Hsp_hit-to>1121</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	184 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	185 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	186 <Hsp_identity>116</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	187 <Hsp_positive>190</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	188 <Hsp_gaps>77</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	189 <Hsp_align-len>459</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	190 <Hsp_qseq>WEAIKSAISTAVEAVVSFVMDLW--------GQMVAWWN---ENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSN--GWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLI-----NGFVEGVKGAAGRLIDAVGGAV</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	191 <Hsp_hseq>WNGIKNFITGVVNAIKNFFTTIWTGIKNFFVGIWTAIYNSVAEKINLIKTVITVVWNAIHTAISMVLNAIWNVISTVWQTIYDFISPLLEAFRYLFETIFEAIHVIISRVMDWIHEKITTAWENIKAVVTIVLEAIKSVIETVWNAI----HTAIT-------TVMDAISNVISTVWNAISSFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAIS-----------GFISGVLNTISSVVSSIWNGIKNTVTNILNTIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNF-------IKNLASQAFQWGADII---------------NGIVNGIKNCIGKVADAVKGVANKIKSFLHFSVPD-EGTLADFESW--------------MPDFMQGLAQGINKSKKYVEKAISGVADAMTIAMNSDFNVDMSGVTGAMVGAGGTTV</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	192 <Hsp_midline>W IK+ I+ V A+ +F +W G A +N E LI+ VWNAI T + V+ A+ ++ T W I ++ +L + + +T + + II VM I+ + AWE +K V + E IKS+++ + + T + TV I V+ +W+ I + +S + A+W +I +I SI+ NAI V S +W AIS G+I L I +V S+ W IK IL TI V+ +D +K A++ IK +NA F IK AS A++W I N I I N + + A + N IKS + ++ + + T+++ W + G +N ++ ++ AIS D + + F + G G ++ A G V</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	193 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	194 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	195 <Hsp_num>4</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	196 <Hsp_bit-score>115.160510568324</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	197 <Hsp_score>287</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	198 <Hsp_evalue>2.80602663410135e-23</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	199 <Hsp_query-from>501</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	200 <Hsp_query-to>1694</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	201 <Hsp_hit-from>770</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	202 <Hsp_hit-to>1144</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	203 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	204 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	205 <Hsp_identity>100</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	206 <Hsp_positive>176</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	207 <Hsp_gaps>39</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	208 <Hsp_align-len>406</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	209 <Hsp_qseq>RTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWET----LKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENI-KSTVSNGWNNLVSTV---TNAGPRIVS</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	210 <Hsp_hseq>KTVITVVWNAIHTAISMVLNAIWNVISTVWQTIYDFISPLLEAFRYLFETIFEAIHVIISRVMDWIHEKITTAWENIKAVVTIVLEAIKSVIETVWNAIHTAITTVMDAISNVISTVWNAISSFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVL--------NTISSVVSSIWNGIKNTVTNI-------LNTIKTTVSNIWDSVKNAVTQKITAI-------KDTIVNGFNAAVNFIKNLASQAFQWGADIINGIVNGIKNCIGKVADAVK----GVANKIKSFLHFSVPDEGTLAD-----FESWMPDFMQGLAQGINKSKKYVEKAISGVADAMTIAMNSDFNVDMSGVTGAMVGAGGTTVVNNYNNDNSRTVNQTNNSPKSLS</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	211 <Hsp_midline>+T + W AI +AIS + A+ + + +W + + + E R ET++ AI ++ VM + + TAW+ I AVVT VL IK+V++T + I VM I+ S W + GV IW I S+ D + A + ++W+ + G I V+ T+S+ ++++W I+N +T+I N I T SNIW ++ V +T I + I ++AA IK + + ++ G + IK I + +K + N I +FL T A ++ + + M + I + ++ +IS + + A + +N S ++ A+ +TV N +NN S TN P+ +S</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	212 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	213 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	214 <Hsp_num>5</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	215 <Hsp_bit-score>90.8929372855311</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	216 <Hsp_score>224</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	217 <Hsp_evalue>5.66707902872949e-16</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	218 <Hsp_query-from>492</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	219 <Hsp_query-to>1148</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	220 <Hsp_hit-from>811</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	221 <Hsp_hit-to>1044</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	222 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	223 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	224 <Hsp_identity>67</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	225 <Hsp_positive>106</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	226 <Hsp_gaps>29</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	227 <Hsp_align-len>241</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	228 <Hsp_qseq>EEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDT-----------GLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWD-----------WIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNI</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	229 <Hsp_hseq>EAFRYLFETIFEAIHVIISRVMDWIHEKITTAWENIKAVVTIVLEAIKSVIETVWNAIHTAITTVMDAISNVISTVWNAISSFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVLNTISSVVSSIWNGIKNTV-------TNILNTIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNFIKNLASQAFQWGADIINGIVNGIKNCIGKVADAVKGVANKI</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	230 <Hsp_midline>E FR + +EAI IS ++ + + W + A E I+ ETVWNAI T + TVM A+ ++ T W+ I + ++ V+N I +V+ + L + ++ AV I+G SG T+ V +IW GIK+ V I T + +IWD+V + + I D +IK S A +II I+ I+ V +A+ VA+ I</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	231 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	232 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	233 <Hsp_num>6</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	234 <Hsp_bit-score>51.9877801178785</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	235 <Hsp_score>123</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	236 <Hsp_evalue>0.000291728300853117</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	237 <Hsp_query-from>1158</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	238 <Hsp_query-to>1883</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	239 <Hsp_hit-from>547</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	240 <Hsp_hit-to>775</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	241 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	242 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	243 <Hsp_identity>50</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	244 <Hsp_positive>102</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	245 <Hsp_gaps>35</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	246 <Hsp_align-len>253</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	247 <Hsp_qseq>ISTTVMSVLTTIWGYIQTYLELIKT------VWSAAWEIIKAVFAAILLTIVGLVTG-NFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTI----KSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGI</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	248 <Hsp_hseq>ISAPVVAVIAVVAALVAAFVHLWRTNEDFRNKITAIWNQIKSIFDNFCQGIVDRVNALGFDF-----KNISEVIKA----VWDGLCKFLAPVFEGVFQQVANIFKAVTDIILNILDIFVGIFTGDWSRVWDGIKGIFVAVWNFLKDTLKNYLNVLCNLFGTNLDEVKEFWVNVW---------------TSIKNFFVNIWNGIKNFITGVVNAIKNFFTTIWTGIKNFFVGIWTAIYNSVAEKINLIKTVITV</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	249 <Hsp_midline>IS V++V+ + + ++ L +T +A W IK++F IV V FD N E+IK +W+ + FL+ ++EG+ + ++ + I N++ + W+ IK N +K +N N + + T ++ +K N W ++++ F N N +NFI+ ++ + G+K + A+ +V+ I+ K ++ +</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	250 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	251 </Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	252 </Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	253 <Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	254 <Hit_num>5</Hit_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	255 <Hit_id>gi\|268610688\|ref\|ZP_06144415.1\|</Hit_id>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	256 <Hit_def>hypothetical protein RflaF_14482 [Ruminococcus flavefaciens FD-1]</Hit_def>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	257 <Hit_accession>ZP_06144415</Hit_accession>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	258 <Hit_len>1444</Hit_len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	259 <Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	260 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	261 <Hsp_num>1</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	262 <Hsp_bit-score>234.572379102704</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	263 <Hsp_score>597</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	264 <Hsp_evalue>3.17349283264528e-59</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	265 <Hsp_query-from>78</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	266 <Hsp_query-to>1847</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	267 <Hsp_hit-from>440</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	268 <Hsp_hit-to>1042</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	269 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	270 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	271 <Hsp_identity>185</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	272 <Hsp_positive>294</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	273 <Hsp_gaps>85</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	274 <Hsp_align-len>639</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	275 <Hsp_qseq>NLVAGLGQKDADIKGLLSNLGETIQNFVRNVKNVVLTIWDNL-PLAPWQKW----LGLIAVAAGPFLMLLGXXXXXXXXXXXXXXXXXXXXNWFHLLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVS-------NAITAVWEIIQN----IMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQT---------------YLELIKTVWSA------------------AWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVS</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	276 <Hsp_hseq>NLGGQLTILKSQLQELAISFGEILMPAIRSIVSRIQGLIDKFNALSPATKETIVKVALVAATLGPLLVVVGKTMVGVGKLMQLVA------NLPTIIASAKAA----FTSFGAAIGGISAPVVAVIAVVAALVAAFVHLWRTNEDFRNKITAIWEQIKSIFSGFCQGIVDRINALGFDF---------------KNITEVIKAVWDGLCKFLKPIFEGQFQ-------QIANIFKAVTD----IILSVLDIFVGIFTGDWSRVWDGIKGIFVAVWNFIKDTLKNALNMICGIFGTDLGEVKEFWVGVWTSIKNFFVNIWNGIKNFISSVLGGIKNFFTTIWTGIKNFFVGIWTAIYSSVSEKINLIKTVITVVWNAIHTAISTVLNAIWSVITTVWQTIYDFISPLLEAFRYLFETIFEAIHVIISRVMDWIHDKIVERWETIKAIVTVVLEAIKSVIETVWNAIHTAISTVMDAIHNVVSTVWNAISGFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVLNTISSVVSSIWNGIKNTVTNILNAIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNFIKNLGSQAFQWGADIINNIVSGIKNCIGKVADAVKGVAN</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	277 <Hsp_midline>NL L + ++ L + GE + +R++ + + + D L+P K + L+A GP L+++G + ++ + + N ++ S +A F I GISAP+ AVI V+AALVA FV L+ TNE+FR K+ A WE IKS S + +V + L + + I+ V + + L PI + + + N+ K V D ++L ++ + + GDWS W+ +KG+ +W IK ++ A++ + IF T L +K W VW +I IW+ IK +S N T +W I+N I T+I ++ N I TV + +W AI T + +VL IW I T + L +T++ A WE IKA+ +L I ++ ++ I AIS + I S +WNAI+ F+SG+ I + S+ W IK I+N + I + + WN I IS LN I S + WN IK+ ++ + IK+TVSN W+++ + VT I + GF+ AVN +N S A G D+IN V G+K G++ DAV G +</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	278 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	279 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	280 <Hsp_num>2</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	281 <Hsp_bit-score>167.932852469002</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	282 <Hsp_score>424</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	283 <Hsp_evalue>3.64782449590402e-39</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	284 <Hsp_query-from>501</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	285 <Hsp_query-to>1856</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	286 <Hsp_hit-from>770</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	287 <Hsp_hit-to>1245</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	288 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	289 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	290 <Hsp_identity>121</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	291 <Hsp_positive>216</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	292 <Hsp_gaps>54</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	293 <Hsp_align-len>491</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	294 <Hsp_qseq>RTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWET----LKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLT----TIWGYIQTYLELIKTVWSAAW----EIIKAVFAAI---LLTIVGLVTGNFDLIKQ------------AISNAW---------EIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGW---NNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAI</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	295 <Hsp_hseq>KTVITVVWNAIHTAISTVLNAIWSVITTVWQTIYDFISPLLEAFRYLFETIFEAIHVIISRVMDWIHDKIVERWETIKAIVTVVLEAIKSVIETVWNAIHTAISTVMDAIHNVVSTVWNAISGFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVL--------NTISSVVSSIWNGIKNTVTNI-------LNAIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNFIKNLGSQAFQWGADIINNIVSGIKNCIGKVADAVKGVANKIKSFLHFSVPDEGPLADFESWMPDFMQGLADGINANTSVVNDAVNSFAGGLAEKISSVIQNALSNVVTSVQGFMTQVFDTVKTVWTNANAAIDATMSQISSGITSGWKTIVSTIKTALENIRNVITTTWKAVSSVISAALDGIKKIVTVVWTALKNLIKTGQLDIKSVVTTTWEAVSGVVRTAVNAIKSVVQAVWDAMPDTV</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	296 <Hsp_midline>+T + W AI +AIST + A+ S + +W + + + E R ET++ AI ++ VM + + W+ I A+VT VL IK+V++T + I VM I+ S W + GV IW I S+ D + A + ++W+ + G I V+ T+S+ ++++W I+N +T+I NAI T SNIW ++ V +T TI + IK + S A+ +II + + I + + V G + IK A +W + I TS + +A+ +F G+ E I + A + T++ MT + ++T W N +I ++ I S + W I S I TA+ENI++ ++ W ++++S + +IV+ V T N + + I + ++ + ++G V A ++ AV A+ +</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	297 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	298 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	299 <Hsp_num>3</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	300 <Hsp_bit-score>161.769659254324</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	301 <Hsp_score>408</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	302 <Hsp_evalue>2.61420693292496e-37</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	303 <Hsp_query-from>492</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	304 <Hsp_query-to>1832</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	305 <Hsp_hit-from>811</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	306 <Hsp_hit-to>1322</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	307 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	308 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	309 <Hsp_identity>123</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	310 <Hsp_positive>220</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	311 <Hsp_gaps>75</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	312 <Hsp_align-len>517</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	313 <Hsp_qseq>EEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDT-----------GLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAI--------------------------DGLVQIFQTGLAFLKSIWDTV--WGT---------IMAVVGPIWDWIKTTVSNAITAV----------------W--EIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMS----VLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAV</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	314 <Hsp_hseq>EAFRYLFETIFEAIHVIISRVMDWIHDKIVERWETIKAIVTVVLEAIKSVIETVWNAIHTAISTVMDAIHNVVSTVWNAISGFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVLNTISSVVSSIWNGIKNTVTNILNAIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNFIKNLGSQAFQWGADIINNIVSGIKNCIGKVADAVKG-VANKIKSFLHFSVPDEGPLADFESWMPDFMQGLADGINANTSVVNDAVNSFAGGLAEKISSVIQNALSNVVTSVQGFMTQVFDTVKTVWTNA----NAAIDATMSQISSGITSGWKTIVSTIKTALENIRNVITTTWKAVSSVISAALDGIKKIVTVVWTALKNLIKTGQLDIKSVVTTTWEAVSGVVRTAVNAIKSVVQAVWDAMPDTVRSAMNRVKEAVLSIWDGIKSGIGDRLGGVRDAVVNAMNAVYKAVKDKVNSSWSWGRDLMQNLINGITYMLGSLINTV</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	315 <Hsp_midline>E FR + +EAI IS ++ + +++ W + A E I+ ETVWNAI T + TVM A+ +V T W+ I ++ V+N I +V+ + L + ++ AV I+G SG T+ V +IW GIK+ V + D +V F + F+K++ WG I +G + D +K V+N I + W + +Q + I V +A+++ A + IS+ + + V+T++ G++ + +KTVW+ A A A + I +T + I I A E I+ + W A+++ +S +GIK + W +K I IKS + T W + + A+N IKS + W+ + + +A+ +K V + W+ + S + + + AV + A ++ ++++ S G DL+ + G+ G LI+ V</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	316 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	317 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	318 <Hsp_num>4</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	319 <Hsp_bit-score>123.249701662589</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	320 <Hsp_score>308</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	321 <Hsp_evalue>1.03039235764918e-25</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	322 <Hsp_query-from>510</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	323 <Hsp_query-to>1859</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	324 <Hsp_hit-from>905</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	325 <Hsp_hit-to>1377</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	326 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	327 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	328 <Hsp_identity>108</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	329 <Hsp_positive>204</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	330 <Hsp_gaps>63</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	331 <Hsp_align-len>493</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	332 <Hsp_qseq>VQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAV--------MQMINGDWSG-------AWETLKGVAGTIWEGIKSLVQVAI--DGLVQIFQTGLA-FLKSIWD-------TVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVT------------GNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLIN------GFVEGVKGAAGRLIDAVGGAVSGAID</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	333 <Hsp_hseq>ISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVLNTISSVVSSIWNGIKNTVTNILNAIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNFIKNLGSQAFQWGADIINNIVSGIKNCIGKVADAVKGVANKI----KSFLHFSVPDEGPLADFESWMPDFMQGLADGINANTSVVNDAVNSFAGGLAEKISSVIQNALSNVVTSVQGFMTQVFDTVKTVWTNANAAIDATMSQISSGITSGWKTIVSTIKTALENIRNVITTTWKAVSSVISAALDGIKKIVTVVWTALKNLIKTGQLD-IKSVVTTTWEAVSGVVRTAVNA-----------IKSVVQAVWDAMPDTVRSAMNRVKEAVLSIWDGIKSGIGDRLGGVRDAVVNAMNAVYKAVKDKVNSSWSWGRDLMQNLINGITYMLGSLINTVA----DVARSIWEYLHFSVPEKGALTDVEEWMPDFMKGLAKGINKSKKYVEAAVSGVAD</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	334 <Hsp_midline>+ + W +IK I+ + A+ + V +W + + + I ++WN I+ V ++ A+ V WD + VT + IK + G + IK + +IN SG + +KGVA I KS + ++ +G + F++ + F++ + D V + + G + + I + + NA++ V +Q MT + T TVW + + IS+ + S TI I+T LE I+ V + W+ + +V +A L I +VT G D IK ++ WE + NA IK+ W+ + T+ + M +K + + W+ IK+ I + L ++ A NA N + A+ + + S + NL++ +T +++ V + + ++ ++ G L + F++G+ + V AVSG D</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	335 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	336 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	337 <Hsp_num>5</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	338 <Hsp_bit-score>71.6329584896635</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	339 <Hsp_score>174</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	340 <Hsp_evalue>3.55787431696712e-10</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	341 <Hsp_query-from>486</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	342 <Hsp_query-to>1343</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	343 <Hsp_hit-from>1138</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	344 <Hsp_hit-to>1400</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	345 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	346 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	347 <Hsp_identity>60</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	348 <Hsp_positive>128</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	349 <Hsp_gaps>35</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	350 <Hsp_align-len>292</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	351 <Hsp_qseq>TNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTV--MSVLTTIWGYIQTYLELIKTVWSAAWEIIKA----VFAAILLTIVGLVTGNFDLIKQAISN</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	352 <Hsp_hseq>TMSQISSGITSGWKTIVSTIKTALENIRNVITTTWKAVSSVISAALDGIKKIVTVVWTALKNLIKTGQLDIKSVVTTTWEAVSGVVRTAVNAIKSVV-----------QAVWDAMPDTVRSAMNRVKEAVLSIWDGIKSGIGDRLGGVRDAVVNAM-------NAVYKAVKDKVNSSWSWGR-----------DLMQNLINGITYMLGSLINTVADVARSIWEYLHFSVPEKGALTDVEEWMPDFMKGLAKGINKSKKYVEAAVSGVADAMTLTMQSGLNVDMDGISGAMMN</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	353 <Hsp_midline>T + + + + W+ I S I TA+E + + + W + + + + I++ VW A++ +++T + +V T W+ + VV T +N IK+VV +AV + A +K +IW+GIKS + + G+ + + V+ + V W W + +++QN++ I ++ N ++ VA +IW + +V LT + ++ +++ + + + + ++A V A+ LT+ + + D I A+ N</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	354 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	355 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	356 <Hsp_num>6</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	357 <Hsp_bit-score>53.9137779974652</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	358 <Hsp_score>128</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	359 <Hsp_evalue>7.67706873813937e-05</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	360 <Hsp_query-from>894</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	361 <Hsp_query-to>1883</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	362 <Hsp_hit-from>467</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	363 <Hsp_hit-to>775</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	364 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	365 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	366 <Hsp_identity>73</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	367 <Hsp_positive>133</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	368 <Hsp_gaps>43</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	369 <Hsp_align-len>341</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	370 <Hsp_qseq>IKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKT------VWSAAWEIIKAVFAAILLTIVGLVTG-NFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTI----KSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGI</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	371 <Hsp_hseq>IRSIVS-RIQGLIDKFNALSPATKETIVKV-ALVAATLGPLLVVVGKTMVG-VGKLMQLVANLPTIIASA-----KAAFTSFGAAIGGISAPVVAVIAVVAALVAAFVHLWRTNEDFRNKITAIWEQIKSIFSGFCQGIVDRINALGFDF-----KNITEVIKA----VWDGLCKFLKPIFEGQFQQIANIFKAVTDIILSVLDIFVGIFTGDWSRVWDGIKGIFVAVWNFIKDTLKNALNMICGIFGTDLGEVKEFWVGVW---------------TSIKNFFVNIWNGIKNFISSVLGGIKNFFTTIWTGIKNFFVGIWTAIYSSVSEKINLIKTVITV</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	372 <Hsp_midline>I+S+V I GL+ F K V + A +GP+ + T+ + + +++ N+ T I + A T IS V++V+ + + ++ L +T +A WE IK++F+ IV + FD N E+IK +W+ + FL I+EG + ++ + I +V+ + W+ IK N IK +NA N I T + +K W ++++ F N N +NFIS+ + + G+K + A+ +VS I+ K ++ +</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	373 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	374 </Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	375 </Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	376 <Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	377 <Hit_num>6</Hit_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	378 <Hit_id>gi\|153811333\|ref\|ZP_01964001.1\|</Hit_id>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	379 <Hit_def>hypothetical protein RUMOBE_01725 [Ruminococcus obeum ATCC 29174] >gi\|149832460\|gb\|EDM87544.1\| hypothetical protein RUMOBE_01725 [Ruminococcus obeum ATCC 29174]</Hit_def>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	380 <Hit_accession>ZP_01964001</Hit_accession>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	381 <Hit_len>1228</Hit_len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	382 <Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	383 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	384 <Hsp_num>1</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	385 <Hsp_bit-score>219.934795217844</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	386 <Hsp_score>559</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	387 <Hsp_evalue>8.08889755547188e-55</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	388 <Hsp_query-from>108</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	389 <Hsp_query-to>1847</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	390 <Hsp_hit-from>493</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	391 <Hsp_hit-to>1073</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	392 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	393 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	394 <Hsp_identity>176</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	395 <Hsp_positive>285</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	396 <Hsp_gaps>81</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	397 <Hsp_align-len>621</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	398 <Hsp_qseq>ADIKGLLSNLGETIQNFVRNVKNVVLTIWDNL-PLAPWQKW----LGLIAVAAGPFLMLLGXXXXXXXXXXXXXXXXXXXXNWFHLLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKT-------TVSNAITAVWE-IIQNI---MTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELI----KTVWS-------AAWEIIK-AVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIW------------EGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTS-ISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVS</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	399 <Hsp_hseq>SQLQELAISFGEILMPKIRDIVTHIQNFVDKLNAMDEGQKETILRIGMFVAALAPMLMGLGKVITFSANVSRALGTLSAG-----LVKAGG--FSGVFTKALGLI---TSPAAIVVGVIAAITAVIIHLWNTNEDFRNTITAIWQKIKDAFTTFAAGI---------------SERLSALGITFSDVTSAIKTIWDGFCNLLAPVLEAAFSTIAIALQTAFNVI-----------LGIWDVFSAVFSGDWSGAWEAIKGIFSSIWDGLKEYFSTIIGAVKGVADVFLGWFGTNWETVWNGVKTFFEGIWNGISSFFEGIWNGISTFCTTVWNGIVTNVTAFCTTVHDTISTIFNAVKDVVSNVWETIKNVVQVAIMFIVEVVKAAFELITVPFRFIWENCRDTIISVWETIKSAVQTAINFVKDNIITPVMNAISATITTVWNAIQTTFTTVINAIKSAVQTAWNFMKDNVVTPVMNAISTTISTVWNTIKTTFTTVINAIKSAVQTAWNFMKNSVITPVMNGIKTVITTVWNAIKTAVQTVVNAIKTTVQTVFNAVKTTVTT----IWNAIKTGTSTAWNAVKTAVTTPINAAKSAVTSAINGIKSTISSVWNSVKSATS</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	400 <Hsp_midline>+ ++ L + GE + +R++ + D L + QK +G+ A P LM LG + + V +S L+ +GG S +F K +G+I ++P V+GVIAA+ A + L+NTNE+FR + A W+ IK A +T + +E + T V +AI+T+ + L P+++ A+ I + T NVI LGI + +GDWSGAWE +KG+ +IW+G+K I + + L + + W+TVW + IW+ I + +S T VW I+ N+ T++ T T++NA+ V SN+W I V + I ++ ELI + +W + WE IK AV AI ++T + I I+ W I+T + + NAI + + W I T ST W IKTT + V+ IKS ++TAWN +K S I+ +N IK+ WN IK+A+ T + IK+TV +N + +TVT I +A++TG A NA + ++ I+ + + G+K + ++V A S</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	401 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	402 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	403 <Hsp_num>2</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	404 <Hsp_bit-score>195.667221935051</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	405 <Hsp_score>496</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	406 <Hsp_evalue>1.63364171761813e-47</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	407 <Hsp_query-from>519</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	408 <Hsp_query-to>1760</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	409 <Hsp_hit-from>709</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	410 <Hsp_hit-to>1099</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	411 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	412 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	413 <Hsp_identity>127</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	414 <Hsp_positive>197</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	415 <Hsp_gaps>51</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	416 <Hsp_align-len>428</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	417 <Hsp_qseq>AWEAIKSAISTAVEAVVSFVMDLWGQM-------VAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWE-IIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQT-----YLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKT-SEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAIS</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	418 <Hsp_hseq>AWEAIKGIFSSIWDGLKEYFSTIIGAVKGVADVFLGWFGTNWE-------TVWNGVKTFFEGIWNGISSFFEGIWNGISTFCTTVWNGIVTNVTAFCTTVHDTISTIFNAV-----------KDVVSNVWETIKNVVQVAIMFIVEVVKAAFELITVPFRFIWENCRDTIISVWETIKSAVQTAINFVKDNIITPVMNAISATITTVWNAIQTT----FTTVINAIKSAVQTAWNFMKDNVVTPVMNAISTTISTVWNTIKTTFTTVI-----------NAIKSAVQTAWNFMKNSVITPVMNGIKTVITTVWNAIKTAVQTVVNAIKTTVQTVFNAVKTTVTTIWNAIKTGTSTAWNAVKTAVTTPINAAKSAVTSAINGIKSTISSVWNSVKSATSSTWNAIKRAITT----PINAAKTAVGNAIS</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	419 <Hsp_midline>AWEAIK S+ + + + + G + + W+ N E TVWN ++T E + + + W+ I TTV N I T V V I + + K V +WE IK++VQVAI +V++ + + + +W + +W+ IK+ V AI V + II +M +I T TVWNAI T +T + + S + T W +++ + I T S W IK F ++ + IK A+ AW +K + + N I T ++ +W IKTA T IKTT+ V +K+ + T WN IKT S A N +K+A N KSA+++AI IKST+S+ WN++ S ++ I A+ T +NAA+ + NAIS</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	420 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	421 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	422 <Hsp_num>3</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	423 <Hsp_bit-score>169.473650772671</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	424 <Hsp_score>428</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	425 <Hsp_evalue>1.25373984602686e-39</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	426 <Hsp_query-from>498</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	427 <Hsp_query-to>1640</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	428 <Hsp_hit-from>746</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	429 <Hsp_hit-to>1096</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	430 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	431 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	432 <Hsp_identity>115</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	433 <Hsp_positive>178</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	434 <Hsp_gaps>50</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	435 <Hsp_align-len>391</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	436 <Hsp_qseq>FRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLK-SIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWD--------TVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIK-TVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSN</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	437 <Hsp_hseq>FGTNWETVWNGVKTFFEGIWNGISSFFEGIWNGISTF-----------CTTVWNGIVTNVTAFCTTVHDTISTIFNAVKDVVSNVWETIKNVVQVAIMFIVEVVKAAFELITVPFRFIWENCRDTIISVWETIKSAVQTAIN-----------FVKDNIITPVMNAISATITTVWNAIQTTFTTVINA-------IKSAVQTAWNFMKDNVVTPVMNAISTTISTVWNTIKTTFTTVINAIKSAVQTAWNFMKNSVITPVMNGIKTVITTVWNAIKTAVQTVVNAIKTTVQTVFNAVKTTVTTIWNA-----------IKTGTSTAWNAVKTAVTTPINAAKSAVTSAINGIKSTISSVWNSVKSATSSTWNAIKRAITTPINAAKTAVGN</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	438 <Hsp_midline>F T + W +K+ + SF +W + + TVWN I T V T + + T ++ + VV+ V IK VV + ++ ++KA ++I + WE + ++WE IKS VQ AI+ F+K +I V I A + +W+ I+TT + I A I +++QT W+ V NAIST S +W I TT +V+ I +QT +K +V + IK V + I V + IK + + +KT + IWNA IKT STAW +KT ++ + KS + +A N IK++IS+ N++KSA + WN IK AI+T I K+ V N</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	439 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	440 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	441 <Hsp_num>4</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	442 <Hsp_bit-score>118.242107175663</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	443 <Hsp_score>295</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	444 <Hsp_evalue>3.31465838308759e-24</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	445 <Hsp_query-from>492</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	446 <Hsp_query-to>1256</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	447 <Hsp_hit-from>854</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	448 <Hsp_hit-to>1111</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	449 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	450 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	451 <Hsp_identity>71</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	452 <Hsp_positive>119</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	453 <Hsp_gaps>23</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	454 <Hsp_align-len>268</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	455 <Hsp_qseq>EEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILA-VVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKG------------VAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEI</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	456 <Hsp_hseq>ENCRDTIISVWETIKSAVQTAINFVKDNII----------TPVMNAISATITTVWNAIQTTFTTVINAIKSAVQTAWNFMKDNVVTPVMNAISTTISTVWNTIKTTFTTVINAIKSAVQTAWNFMKNSVITPVMNGIKTVITTVWNAIKTAVQTVVNAIKTTVQTVFNAVKTTVTTIWNAIKTGTSTAWNAVKTAVTTPINAAKSAVTSAINGIKSTISSVWNSVKSATSSTWNAIKRAITTPINAAKTAVGNAISAIRSKFNFSWSL</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	457 <Hsp_midline>E R + + WE IKSA+ TA+ V ++ I T TVWNAI+T TV+ A+ VQTAW+ + VVT V+N I T + T + V+ I AW +K V T+W IK+ VQ ++ + QT +K+ T+W I W+ +KT V+ I A + + + I++T +VWN++ + S+ W AI + + + + + I++ ++ +W +</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	458 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	459 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	460 <Hsp_num>5</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	461 <Hsp_bit-score>116.316109296076</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	462 <Hsp_score>290</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	463 <Hsp_evalue>1.25956884194974e-23</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	464 <Hsp_query-from>510</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	465 <Hsp_query-to>1385</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	466 <Hsp_hit-from>816</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	467 <Hsp_hit-to>1110</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	468 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	469 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	470 <Hsp_identity>83</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	471 <Hsp_positive>132</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	472 <Hsp_gaps>25</Hsp_gaps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	473 <Hsp_align-len>306</Hsp_align-len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	474 <Hsp_qseq>VQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVET------------VMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVL-GIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQ-IFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWN</Hsp_qseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	475 <Hsp_hseq>VSNVWETIKNVVQVAIMFIVEVVKAAFELITVPFRFIWENCRDTIISVWETIKSAVQTAINFVKDNIITPVMNAISATITTVWNAIQTTFTTVINAIKSAVQTAWNFMKDNVVTPVMNAISTTISTVWNTIKTTFTTVINAIKSAVQTAWNFMKNSVITPVMNGIKTVITTVWNAIKTAVQTVVNAIKTTVQTVFNAVKTTVTTIWNAIKTGTSTAWNAVKTAVTTPINAAKSAVTSAINGIKSTISSVWNSVKSATSSTWNAIKRA-----------ITTPINAAKTAVGNAISAIRSKFNFSWS</Hsp_hseq>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	476 <Hsp_midline>V WE IK+ + A+ +V V + + + E R T +VW I++ V+T VM A+ + T W+ I TTV+N IK+ V T + ++ VM I+ S W T+K T+ IKS VQ A + + + + +K++ TVW I V + + IKTTV AV + I +I+T T WNA+ T + A + V S + I I + +K+ S+ W IK +T + K A+ NA I++K + W+</Hsp_midline>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	477 </Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	478 </Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	479 </Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	480 <Hit>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	481 <Hit_num>7</Hit_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	482 <Hit_id>gi\|262113750\|emb\|CAR95417.1\|</Hit_id>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	483 <Hit_def>hypothetical protein [Streptococcus phage phi-m46.1]</Hit_def>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	484 <Hit_accession>CAR95417</Hit_accession>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	485 <Hit_len>952</Hit_len>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	486 <Hit_hsps>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	487 <Hsp>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	488 <Hsp_num>1</Hsp_num>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	489 <Hsp_bit-score>218.779196490092</Hsp_bit-score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	490 <Hsp_score>556</Hsp_score>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	491 <Hsp_evalue>1.80201837527491e-54</Hsp_evalue>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	492 <Hsp_query-from>384</Hsp_query-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	493 <Hsp_query-to>1241</Hsp_query-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	494 <Hsp_hit-from>540</Hsp_hit-from>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	495 <Hsp_hit-to>818</Hsp_hit-to>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	496 <Hsp_query-frame>3</Hsp_query-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	497 <Hsp_hit-frame>0</Hsp_hit-frame>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	498 <Hsp_identity>110</Hsp_identity>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	499 <Hsp_positive>166</Hsp_positive>
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update). peterjc parents: diff changeset	500 <Hsp_gaps>7</Hsp_gaps>

2

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

1 <?xml version="1.0"?>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd">

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

3 <BlastOutput>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

4 <BlastOutput_program>blastx</BlastOutput_program>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

5 <BlastOutput_version>BLASTX 2.2.24+</BlastOutput_version>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

7 <BlastOutput_db>/share/BlastDB/nr</BlastOutput_db>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

9 <BlastOutput_query-def>phage_suis</BlastOutput_query-def>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

10 <BlastOutput_query-len>1890</BlastOutput_query-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

11 <BlastOutput_param>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

12 <Parameters>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

13 <Parameters_matrix>BLOSUM62</Parameters_matrix>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

14 <Parameters_expect>0.001</Parameters_expect>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

15 <Parameters_gap-open>11</Parameters_gap-open>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

16 <Parameters_gap-extend>1</Parameters_gap-extend>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

17 <Parameters_filter>L;</Parameters_filter>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

18 </Parameters>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

19 </BlastOutput_param>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

20 <BlastOutput_iterations>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

21 <Iteration>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

22 <Iteration_iter-num>1</Iteration_iter-num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

23 <Iteration_query-ID>Query_1</Iteration_query-ID>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

24 <Iteration_query-def>phage_suis</Iteration_query-def>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

25 <Iteration_query-len>1890</Iteration_query-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

26 <Iteration_hits>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

27 <Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

28 <Hit_num>1</Hit_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

29 <Hit_id>gi|119953746|ref|YP_950551.1|</Hit_id>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

30 <Hit_def>tail tape measure protein [Streptococcus phage SMP] >gi|118430558|gb|ABK91882.1| tail tape measure protein [Streptococcus phage SMP]</Hit_def>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

31 <Hit_accession>YP_950551</Hit_accession>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

32 <Hit_len>659</Hit_len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

33 <Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

34 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

35 <Hsp_num>1</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

36 <Hsp_bit-score>988.407949172964</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

37 <Hsp_score>2554</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

38 <Hsp_evalue>0</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

39 <Hsp_query-from>336</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

40 <Hsp_query-to>1889</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

41 <Hsp_hit-from>25</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

42 <Hsp_hit-to>542</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

43 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

44 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

45 <Hsp_identity>518</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

46 <Hsp_positive>518</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

47 <Hsp_gaps>0</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

48 <Hsp_align-len>518</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

49 <Hsp_qseq>NWFHLLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

50 <Hsp_hseq>NWFHLLNSGGSALSVMFAKLVGIIAGISAPIWAVIGVIAALVAGFVLLYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

51 <Hsp_midline>NWFHLLNSGGSALSVMFAKLVGIIAGISAPIWAVIGVIAALVAGFVLLYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

52 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

53 </Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

54 </Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

55 <Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

56 <Hit_num>2</Hit_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

57 <Hit_id>gi|289551554|ref|YP_003472458.1|</Hit_id>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

58 <Hit_def>Phage tail length tape-measure protein [Staphylococcus lugdunensis HKU09-01] >gi|289181085|gb|ADC88330.1| Phage tail length tape-measure protein [Staphylococcus lugdunensis HKU09-01]</Hit_def>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

59 <Hit_accession>YP_003472458</Hit_accession>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

60 <Hit_len>1220</Hit_len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

61 <Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

62 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

63 <Hsp_num>1</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

64 <Hsp_bit-score>256.91395450591</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

65 <Hsp_score>655</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

66 <Hsp_evalue>5.97108392092708e-66</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

67 <Hsp_query-from>342</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

68 <Hsp_query-to>1889</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

69 <Hsp_hit-from>657</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

70 <Hsp_hit-to>1106</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

71 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

72 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

73 <Hsp_identity>170</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

74 <Hsp_positive>254</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

75 <Hsp_gaps>66</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

76 <Hsp_align-len>516</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

77 <Hsp_qseq>FHLLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

78 <Hsp_hseq>FTLLFGKASLVRTVFGLLVGVFTSLSAPVLAVIAVIGSLVAIFVYLWKTNDGFREACINAWNVIKTTVSTVVTVIVAFVKSIWGGLVAWWQQNHVLIQAAATVVWNAIKTVIMTVMNALGPSMKTAWEVIKQAVIIVWEFIKTYVQVAIAVVSGVIKTVMQLITGDWSGAWNTIKQTAMTVWNLIKS-------GATAIFNA----LKVALSAIWNAIKSAASGAWNDMKAVIVAAVNYIKNRVQAQWNTLKAITTGVWNGIKAVISAVWNAIKSFVTSSVSKVKSSVSSGFNSVRNV-------VRSVMSA---------------VKSFISSAWNGVKSIVSGAVGAVKSFVSSGFNAVRNTVSSIMSRVKGIISSI-----------WNSIKSTVSNAVHNMTSA----------------------MSSGMSRMGSAVHSGMSRVSSAVRNGISGAYNAVRGGVYRMVSAGADLARGIARGIMNMAGYVMSRARALASRAVSAIKSALRIHS</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

79 <Hsp_midline>F LL S + +F LVG+ +SAP+ AVI VI +LVA FV L+ TN+ FR AW IK+ +ST V +V+FV +WG +VAWW +N LI+ A VWNAI+TV+ TVM AL P ++TAW++I V V IKT V + VV G+IK VMQ+I GDWSGAW T+K A T+W IKS G IF LK +W I + W+ +K + A+ + +Q +++ VWN I V S +W AI + V S ++ + + + ++ V +++V +A +K IS+AW +K+ S A+ +F+S + ++ S+ +K IS++ WN+IK+++SNA++N+ SA +S+G + + S V + R+ SAVR G A NA R + +S G DL G G+ AG ++ S A+ K L I S</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

80 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

81 </Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

82 </Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

83 <Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

84 <Hit_num>3</Hit_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

85 <Hit_id>gi|223044325|ref|ZP_03614360.1|</Hit_id>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

86 <Hit_def>phage tape measure protein [Staphylococcus capitis SK14] >gi|222442293|gb|EEE48403.1| phage tape measure protein [Staphylococcus capitis SK14]</Hit_def>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

87 <Hit_accession>ZP_03614360</Hit_accession>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

88 <Hit_len>1320</Hit_len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

89 <Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

90 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

91 <Hsp_num>1</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

92 <Hsp_bit-score>252.67675917082</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

93 <Hsp_score>644</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

94 <Hsp_evalue>1.12609769207128e-64</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

95 <Hsp_query-from>393</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

96 <Hsp_query-to>1889</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

97 <Hsp_hit-from>655</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

98 <Hsp_hit-to>1193</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

99 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

100 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

101 <Hsp_identity>165</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

102 <Hsp_positive>275</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

103 <Hsp_gaps>54</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

104 <Hsp_align-len>546</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

105 <Hsp_qseq>LVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTA---ETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLV---------------QVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVG-------PIWDWIKTT-------VSNAITAVWEIIQNIMTSIQTTW----DTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVS-----------AVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

106 <Hsp_hseq>LGGVLAALSGPVGIVIAAVAAVIAIFVALWNSSETLRNALTDAWNAIASSVGAAIQAVLGFLGDLFGRA-------QEILAPLAPMFQQVWSQIVAIVDTAVNVIAPMVKQAFNTVVAVVKVAWEIIKAVIKISMEVILSTIVALLQLLTGDWRGAWQTMSKAGAEIWKAIVEMAKNIWSILGDYLKQSWQNIVDGFSAIFGPLAGIAGSIWNGIVNIVKTVVSGLGAFLTSIWTAIVTSAQVQWSIIATVAQTIWSAIVNVIVTVVTTLVSILATIWTTIVTVASTIWTTLVTVSQTIWTIIVTTITTIVTTLGTILSAIWTGIVTVATTIWTTLVTVAQTIWTLIVTTITTIISTLVTIITTVWTTIVSVTSTIWSSLVAIAQTIWSSVLSIISGIVGVIVAIVTGNWSLLRSSTASIMSGIAGLISAVWNSITSVISSAVSNAVSTAVSGFFNMLSSIGSAMHGIVSSVLSGMMSVVNSVRSGVSNALSAVRNFIGHFTQAGTDLIMGMVNGIKNAAINVVNAAKGVASSAINAVRSVLNSHS</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

107 <Hsp_midline>L G++A +S P+ VI +AA++A FV L+N++E R + AW AI S++ A++AV+ F+ DL+G+ QE++ A + VW+ I +V+T + + P+V+ A++ ++AVV +IK V+ ++V+L I A++Q++ GDW GAW+T+ IW+ I + Q +DG IF SIW+ + + VV IW I T+ ++ +W I N++ ++ TT T+W I TVAS IWT + T ++ T I I T + + T+ SA W I V I T+V + + LI I+ + T + +W I + S IW + A T W + + IS ++ I + + W+ +++S ++ ++ I WN+I S IS+A+ N ST +G+ N++S++ +A IVS +VR+G NA++A RNFI + G DLI G V G+K AA +++A G S AI+ + +L S</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

108 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

109 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

110 <Hsp_num>2</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

111 <Hsp_bit-score>130.568493605019</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

112 <Hsp_score>327</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

113 <Hsp_evalue>6.45396672852224e-28</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

114 <Hsp_query-from>384</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

115 <Hsp_query-to>1796</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

116 <Hsp_hit-from>844</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

117 <Hsp_hit-to>1309</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

118 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

119 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

120 <Hsp_identity>101</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

121 <Hsp_positive>215</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

122 <Hsp_gaps>79</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

123 <Hsp_align-len>508</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

124 <Hsp_qseq>FAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVM----QMINGDWSG-------AWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMS-VLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKS--------------------NIETAWNNIKTSISNALNNIKSAAENAWNNIKSAI--STAIENIKSTVSNG---WNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEG</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

125 <Hsp_hseq>FSAIFGPLAGIAGSI-------------------------------WNGIVNIVKTVVSGLGAFLTSIWTAIVTSAQVQWSIIATVAQTIWSAIVNVIVTVVTTLVSILATIWTTIVTVASTIWTTLVTVSQTIWTIIVTTITTIVTTLGTILSAIWTGIVTVATTIWTTLVTVAQTIWTLIVTTITTIISTLVTIITTVWTTIVSVTSTIWSSLVAIAQTIWSSVLSIISGIVGVIVAIVTGNWSLLRSSTASIMSGIAGLISAVWNSITSVISSAVSNAVSTAVSGFFNMLSSIGSAMHGIVSSVLSGMMSVV--------NSVRSGVSNALSAVRNFIGHFTQAGTDLIMGMVNGIKNAAINVVNAAKGVASSAINAVRSVLNSHSPSRVMMGIGGDFGEGFKIGIDDKKKSVANIAGGLGSSAVKA---VKNAVNPTDVLSDVRSTLKNSNLKIPNIQGDIKNASASANANITHTHEYKTNPSQRVVTVQMDVNNDALTHIVNG</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

126 <Hsp_midline>F+ + G +AGI+ I W I + + T V + +F+ +W +V +I A+T+W+AI V+ TV+T L+ I+ T W I+ V +T+ + TV T +++ I ++ +++ W+G W TL VA TIW I + + I LV I T + S+ T+W +++A+ IW + + +S + + I+ + ++++ ++ + I+ + S +W +I++ + S V + + + ++ ++ SA I+ +V + ++ + + ++ +SNA ++ A T + G+ GIK AA K S+ + ++S + ++ K S++N + S+A A +K+A+ + + +++ST+ N N+ + NA + + + N ++ ++ + V D + V G</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

127 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

128 </Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

129 </Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

130 <Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

131 <Hit_num>4</Hit_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

132 <Hit_id>gi|268611153|ref|ZP_06144880.1|</Hit_id>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

133 <Hit_def>hypothetical protein RflaF_16865 [Ruminococcus flavefaciens FD-1]</Hit_def>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

134 <Hit_accession>ZP_06144880</Hit_accession>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

135 <Hit_len>1158</Hit_len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

136 <Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

137 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

138 <Hsp_num>1</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

139 <Hsp_bit-score>239.194774013712</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

140 <Hsp_score>609</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

141 <Hsp_evalue>1.28842161409548e-60</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

142 <Hsp_query-from>78</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

143 <Hsp_query-to>1847</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

144 <Hsp_hit-from>440</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

145 <Hsp_hit-to>1042</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

146 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

147 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

148 <Hsp_identity>183</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

149 <Hsp_positive>291</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

150 <Hsp_gaps>85</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

151 <Hsp_align-len>639</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

152 <Hsp_qseq>NLVAGLGQKDADIKGLLSNLGETIQNFVRNVKNVVLTIWDNL-PLAPWQKW----LGLIAVAAGPFLMLLGXXXXXXXXXXXXXXXXXXXXNWFHLLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVW-----------NAISTVASNIWTAISTTVMSVLTTIWGYIQT---------------YLELIKTVWSA------------------AWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

153 <Hsp_hseq>NLGGQLTILKSQLQELAISFGEILMPAIRAIVSKIQGFIDKLNAMDPATKETIVKIALVAAALGPLLVVVGKTMVGVGKLMQLVANLPT-------IIAGAKAAFTSFGAAIG---GISAPVVAVIAVVAALVAAFVHLWRTNEDFRNKITAIWNQIKSIFDNFCQGIVDRVNAL--------GFDFKNISEVIKAVWDGL-------CKFLAPVFE-------GVFQQVANIFKAVTD----IILNILDIFVGIFTGDWSRVWDGIKGIFVAVWNFLKDTLKNYLNVLCNLFGTNLDEVKEFWVNVWTSIKNFFVNIWNGIKNFITGVVNAIKNFFTTIWTGIKNFFVGIWTAIYNSVAEKINLIKTVITVVWNAIHTAISMVLNAIWNVISTVWQTIYDFISPLLEAFRYLFETIFEAIHVIISRVMDWIHEKITTAWENIKAVVTIVLEAIKSVIETVWNAIHTAITTVMDAISNVISTVWNAISSFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVLNTISSVVSSIWNGIKNTVTNILNTIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNFIKNLASQAFQWGADIINGIVNGIKNCIGKVADAVKGVAN</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

154 <Hsp_midline>NL L + ++ L + GE + +R + + + D L + P K + L+A A GP L+++G + ++ + + + + +G A F +G GISAP+ AVI V+AALVA FV L+ TNE+FR K+ A W IKS + +V V L + + I + + VW+ + L P+ + V V N+ K V D ++L I+ + + GDWS W+ +KG+ +W +K ++ ++ L +F T L +K W VW +I IW+ IK ++ + A+ I T I+ + +W N I TV + +W AI T + VL IW I T + L +T++ A AWE IKAV +L I ++ ++ I AI+ + I S +WNAI++F+SG+ I + S+ W IK I+N + I + + WN I IS LN I S + WN IK+ ++ + IK+TVSN W+++ + VT I + GF+ AVN +N S A G D+ING V G+K G++ DAV G +</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

155 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

156 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

157 <Hsp_num>2</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

158 <Hsp_bit-score>141.354081730704</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

159 <Hsp_score>355</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

160 <Hsp_evalue>3.65629455324605e-31</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

161 <Hsp_query-from>543</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

162 <Hsp_query-to>1856</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

163 <Hsp_hit-from>547</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

164 <Hsp_hit-to>938</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

165 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

166 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

167 <Hsp_identity>103</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

168 <Hsp_positive>183</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

169 <Hsp_gaps>52</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

170 <Hsp_align-len>441</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

171 <Hsp_qseq>ISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNL---VSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAI</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

172 <Hsp_hseq>ISAPVVAVIAVVAALVAAFVHLWRTNEDF-RNKITAIWNQIKSIFDNFCQGIVDRVNA-------------------LGFDFKNISEVIKAV-------WDGLCKFLAPVFEGVFQQVANIFKAVTDIILNILDIFVGIFTGDWSRVWDGIKGIFVAVWNFLKDTLKNYLNVLCNLFGTNLDEVKEFWVNVWTSIKNFFVNIWNGIKNFITGVVNAI-----------KNFFTTIWTGIKNFF-------VGIWTAIYNSVAEKIN----LIKTVITVVWNAIHTAISMVLNAIWNVISTVWQTIYDFISPLLEAFRYLFETIFEAIHVIISRVMDWIHEKITTAWENIKAVVTIVLEAIKSVIETVWNAIHTAITTVMDAISNVISTVWNAISSFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFI</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

173 <Hsp_midline>IS V AV++ V L V W N++ R +WN I+++ + ++ V + K + +IKAV W G + L V +++ + ++ + D ++ I + W VW I + +W+++K T+ N + + + + ++ W VW +I NIW I + V+ I K ++ W IK F VG+ T ++ + + I+ +IKT + +WNAI T +S + I ST W+ I IS ++ + ET + I IS ++ I AW NIK+ ++ +E IKS + WN + ++TV +A ++S V + ++ N I + IS + I + A ++ AV A+SG I</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

174 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

175 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

176 <Hsp_num>3</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

177 <Hsp_bit-score>140.198483002952</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

178 <Hsp_score>352</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

179 <Hsp_evalue>8.14537447802119e-31</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

180 <Hsp_query-from>522</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

181 <Hsp_query-to>1844</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

182 <Hsp_hit-from>722</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

183 <Hsp_hit-to>1121</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

184 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

185 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

186 <Hsp_identity>116</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

187 <Hsp_positive>190</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

188 <Hsp_gaps>77</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

189 <Hsp_align-len>459</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

190 <Hsp_qseq>WEAIKSAISTAVEAVVSFVMDLW--------GQMVAWWN---ENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSN--GWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLI-----NGFVEGVKGAAGRLIDAVGGAV</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

191 <Hsp_hseq>WNGIKNFITGVVNAIKNFFTTIWTGIKNFFVGIWTAIYNSVAEKINLIKTVITVVWNAIHTAISMVLNAIWNVISTVWQTIYDFISPLLEAFRYLFETIFEAIHVIISRVMDWIHEKITTAWENIKAVVTIVLEAIKSVIETVWNAI----HTAIT-------TVMDAISNVISTVWNAISSFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAIS-----------GFISGVLNTISSVVSSIWNGIKNTVTNILNTIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNF-------IKNLASQAFQWGADII---------------NGIVNGIKNCIGKVADAVKGVANKIKSFLHFSVPD-EGTLADFESW--------------MPDFMQGLAQGINKSKKYVEKAISGVADAMTIAMNSDFNVDMSGVTGAMVGAGGTTV</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

192 <Hsp_midline>W IK+ I+ V A+ +F +W G A +N E LI+ VWNAI T + V+ A+ ++ T W I ++ +L + + +T + + II VM I+ + AWE +K V + E IKS+++ + + T + TV I V+ +W+ I + +S + A+W +I +I SI+ NAI V S +W AIS G+I L I +V S+ W IK IL TI V+ +D +K A++ IK +NA F IK AS A++W I N I I N + + A + N IKS + ++ + + T+++ W + G +N ++ ++ AIS D + + F + G G ++ A G V</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

193 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

194 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

195 <Hsp_num>4</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

196 <Hsp_bit-score>115.160510568324</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

197 <Hsp_score>287</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

198 <Hsp_evalue>2.80602663410135e-23</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

199 <Hsp_query-from>501</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

200 <Hsp_query-to>1694</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

201 <Hsp_hit-from>770</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

202 <Hsp_hit-to>1144</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

203 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

204 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

205 <Hsp_identity>100</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

206 <Hsp_positive>176</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

207 <Hsp_gaps>39</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

208 <Hsp_align-len>406</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

209 <Hsp_qseq>RTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWET----LKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENI-KSTVSNGWNNLVSTV---TNAGPRIVS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

210 <Hsp_hseq>KTVITVVWNAIHTAISMVLNAIWNVISTVWQTIYDFISPLLEAFRYLFETIFEAIHVIISRVMDWIHEKITTAWENIKAVVTIVLEAIKSVIETVWNAIHTAITTVMDAISNVISTVWNAISSFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVL--------NTISSVVSSIWNGIKNTVTNI-------LNTIKTTVSNIWDSVKNAVTQKITAI-------KDTIVNGFNAAVNFIKNLASQAFQWGADIINGIVNGIKNCIGKVADAVK----GVANKIKSFLHFSVPDEGTLAD-----FESWMPDFMQGLAQGINKSKKYVEKAISGVADAMTIAMNSDFNVDMSGVTGAMVGAGGTTVVNNYNNDNSRTVNQTNNSPKSLS</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

211 <Hsp_midline>+T + W AI +AIS + A+ + + +W + + + E R ET++ AI ++ VM + + TAW+ I AVVT VL IK+V++T + I VM I+ S W + GV IW I S+ D + A + ++W+ + G I V+ T+S+ ++++W I+N +T+I N I T SNIW ++ V +T I + I ++AA IK + + ++ G + IK I + +K + N I +FL T A ++ + + M + I + ++ +IS + + A + +N S ++ A+ +TV N +NN S TN P+ +S</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

212 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

213 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

214 <Hsp_num>5</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

215 <Hsp_bit-score>90.8929372855311</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

216 <Hsp_score>224</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

217 <Hsp_evalue>5.66707902872949e-16</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

218 <Hsp_query-from>492</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

219 <Hsp_query-to>1148</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

220 <Hsp_hit-from>811</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

221 <Hsp_hit-to>1044</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

222 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

223 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

224 <Hsp_identity>67</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

225 <Hsp_positive>106</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

226 <Hsp_gaps>29</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

227 <Hsp_align-len>241</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

228 <Hsp_qseq>EEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDT-----------GLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWD-----------WIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNI</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

229 <Hsp_hseq>EAFRYLFETIFEAIHVIISRVMDWIHEKITTAWENIKAVVTIVLEAIKSVIETVWNAIHTAITTVMDAISNVISTVWNAISSFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVLNTISSVVSSIWNGIKNTV-------TNILNTIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNFIKNLASQAFQWGADIINGIVNGIKNCIGKVADAVKGVANKI</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

230 <Hsp_midline>E FR + +EAI IS ++ + + W + A E I+ ETVWNAI T + TVM A+ ++ T W+ I + ++ V+N I +V+ + L + ++ AV I+G SG T+ V +IW GIK+ V I T + +IWD+V + + I D +IK S A +II I+ I+ V +A+ VA+ I</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

231 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

232 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

233 <Hsp_num>6</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

234 <Hsp_bit-score>51.9877801178785</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

235 <Hsp_score>123</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

236 <Hsp_evalue>0.000291728300853117</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

237 <Hsp_query-from>1158</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

238 <Hsp_query-to>1883</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

239 <Hsp_hit-from>547</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

240 <Hsp_hit-to>775</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

241 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

242 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

243 <Hsp_identity>50</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

244 <Hsp_positive>102</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

245 <Hsp_gaps>35</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

246 <Hsp_align-len>253</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

247 <Hsp_qseq>ISTTVMSVLTTIWGYIQTYLELIKT------VWSAAWEIIKAVFAAILLTIVGLVTG-NFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTI----KSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGI</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

248 <Hsp_hseq>ISAPVVAVIAVVAALVAAFVHLWRTNEDFRNKITAIWNQIKSIFDNFCQGIVDRVNALGFDF-----KNISEVIKA----VWDGLCKFLAPVFEGVFQQVANIFKAVTDIILNILDIFVGIFTGDWSRVWDGIKGIFVAVWNFLKDTLKNYLNVLCNLFGTNLDEVKEFWVNVW---------------TSIKNFFVNIWNGIKNFITGVVNAIKNFFTTIWTGIKNFFVGIWTAIYNSVAEKINLIKTVITV</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

249 <Hsp_midline>IS V++V+ + + ++ L +T +A W IK++F IV V FD N E+IK +W+ + FL+ ++EG+ + ++ + I N++ + W+ IK N +K +N N + + T ++ +K N W ++++ F N N +NFI+ ++ + G+K + A+ +V+ I+ K ++ +</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

250 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

251 </Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

252 </Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

253 <Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

254 <Hit_num>5</Hit_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

255 <Hit_id>gi|268610688|ref|ZP_06144415.1|</Hit_id>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

256 <Hit_def>hypothetical protein RflaF_14482 [Ruminococcus flavefaciens FD-1]</Hit_def>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

257 <Hit_accession>ZP_06144415</Hit_accession>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

258 <Hit_len>1444</Hit_len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

259 <Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

260 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

261 <Hsp_num>1</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

262 <Hsp_bit-score>234.572379102704</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

263 <Hsp_score>597</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

264 <Hsp_evalue>3.17349283264528e-59</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

265 <Hsp_query-from>78</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

266 <Hsp_query-to>1847</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

267 <Hsp_hit-from>440</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

268 <Hsp_hit-to>1042</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

269 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

270 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

271 <Hsp_identity>185</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

272 <Hsp_positive>294</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

273 <Hsp_gaps>85</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

274 <Hsp_align-len>639</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

275 <Hsp_qseq>NLVAGLGQKDADIKGLLSNLGETIQNFVRNVKNVVLTIWDNL-PLAPWQKW----LGLIAVAAGPFLMLLGXXXXXXXXXXXXXXXXXXXXNWFHLLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVS-------NAITAVWEIIQN----IMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQT---------------YLELIKTVWSA------------------AWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

276 <Hsp_hseq>NLGGQLTILKSQLQELAISFGEILMPAIRSIVSRIQGLIDKFNALSPATKETIVKVALVAATLGPLLVVVGKTMVGVGKLMQLVA------NLPTIIASAKAA----FTSFGAAIGGISAPVVAVIAVVAALVAAFVHLWRTNEDFRNKITAIWEQIKSIFSGFCQGIVDRINALGFDF---------------KNITEVIKAVWDGLCKFLKPIFEGQFQ-------QIANIFKAVTD----IILSVLDIFVGIFTGDWSRVWDGIKGIFVAVWNFIKDTLKNALNMICGIFGTDLGEVKEFWVGVWTSIKNFFVNIWNGIKNFISSVLGGIKNFFTTIWTGIKNFFVGIWTAIYSSVSEKINLIKTVITVVWNAIHTAISTVLNAIWSVITTVWQTIYDFISPLLEAFRYLFETIFEAIHVIISRVMDWIHDKIVERWETIKAIVTVVLEAIKSVIETVWNAIHTAISTVMDAIHNVVSTVWNAISGFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVLNTISSVVSSIWNGIKNTVTNILNAIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNFIKNLGSQAFQWGADIINNIVSGIKNCIGKVADAVKGVAN</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

277 <Hsp_midline>NL L + ++ L + GE + +R++ + + + D L+P K + L+A GP L+++G + ++ + + N ++ S +A F I GISAP+ AVI V+AALVA FV L+ TNE+FR K+ A WE IKS S + +V + L + + I+ V + + L PI + + + N+ K V D ++L ++ + + GDWS W+ +KG+ +W IK ++ A++ + IF T L +K W VW +I IW+ IK +S N T +W I+N I T+I ++ N I TV + +W AI T + +VL IW I T + L +T++ A WE IKA+ +L I ++ ++ I AIS + I S +WNAI+ F+SG+ I + S+ W IK I+N + I + + WN I IS LN I S + WN IK+ ++ + IK+TVSN W+++ + VT I + GF+ AVN +N S A G D+IN V G+K G++ DAV G +</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

278 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

279 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

280 <Hsp_num>2</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

281 <Hsp_bit-score>167.932852469002</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

282 <Hsp_score>424</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

283 <Hsp_evalue>3.64782449590402e-39</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

284 <Hsp_query-from>501</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

285 <Hsp_query-to>1856</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

286 <Hsp_hit-from>770</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

287 <Hsp_hit-to>1245</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

288 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

289 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

290 <Hsp_identity>121</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

291 <Hsp_positive>216</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

292 <Hsp_gaps>54</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

293 <Hsp_align-len>491</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

294 <Hsp_qseq>RTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWET----LKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLT----TIWGYIQTYLELIKTVWSAAW----EIIKAVFAAI---LLTIVGLVTGNFDLIKQ------------AISNAW---------EIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGW---NNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAI</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

295 <Hsp_hseq>KTVITVVWNAIHTAISTVLNAIWSVITTVWQTIYDFISPLLEAFRYLFETIFEAIHVIISRVMDWIHDKIVERWETIKAIVTVVLEAIKSVIETVWNAIHTAISTVMDAIHNVVSTVWNAISGFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVL--------NTISSVVSSIWNGIKNTVTNI-------LNAIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNFIKNLGSQAFQWGADIINNIVSGIKNCIGKVADAVKGVANKIKSFLHFSVPDEGPLADFESWMPDFMQGLADGINANTSVVNDAVNSFAGGLAEKISSVIQNALSNVVTSVQGFMTQVFDTVKTVWTNANAAIDATMSQISSGITSGWKTIVSTIKTALENIRNVITTTWKAVSSVISAALDGIKKIVTVVWTALKNLIKTGQLDIKSVVTTTWEAVSGVVRTAVNAIKSVVQAVWDAMPDTV</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

296 <Hsp_midline>+T + W AI +AIST + A+ S + +W + + + E R ET++ AI ++ VM + + W+ I A+VT VL IK+V++T + I VM I+ S W + GV IW I S+ D + A + ++W+ + G I V+ T+S+ ++++W I+N +T+I NAI T SNIW ++ V +T TI + IK + S A+ +II + + I + + V G + IK A +W + I TS + +A+ +F G+ E I + A + T++ MT + ++T W N +I ++ I S + W I S I TA+ENI++ ++ W ++++S + +IV+ V T N + + I + ++ + ++G V A ++ AV A+ +</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

297 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

298 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

299 <Hsp_num>3</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

300 <Hsp_bit-score>161.769659254324</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

301 <Hsp_score>408</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

302 <Hsp_evalue>2.61420693292496e-37</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

303 <Hsp_query-from>492</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

304 <Hsp_query-to>1832</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

305 <Hsp_hit-from>811</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

306 <Hsp_hit-to>1322</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

307 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

308 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

309 <Hsp_identity>123</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

310 <Hsp_positive>220</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

311 <Hsp_gaps>75</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

312 <Hsp_align-len>517</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

313 <Hsp_qseq>EEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDT-----------GLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAI--------------------------DGLVQIFQTGLAFLKSIWDTV--WGT---------IMAVVGPIWDWIKTTVSNAITAV----------------W--EIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMS----VLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAV</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

314 <Hsp_hseq>EAFRYLFETIFEAIHVIISRVMDWIHDKIVERWETIKAIVTVVLEAIKSVIETVWNAIHTAISTVMDAIHNVVSTVWNAISGFISGVVNAIWSVISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVLNTISSVVSSIWNGIKNTVTNILNAIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNFIKNLGSQAFQWGADIINNIVSGIKNCIGKVADAVKG-VANKIKSFLHFSVPDEGPLADFESWMPDFMQGLADGINANTSVVNDAVNSFAGGLAEKISSVIQNALSNVVTSVQGFMTQVFDTVKTVWTNA----NAAIDATMSQISSGITSGWKTIVSTIKTALENIRNVITTTWKAVSSVISAALDGIKKIVTVVWTALKNLIKTGQLDIKSVVTTTWEAVSGVVRTAVNAIKSVVQAVWDAMPDTVRSAMNRVKEAVLSIWDGIKSGIGDRLGGVRDAVVNAMNAVYKAVKDKVNSSWSWGRDLMQNLINGITYMLGSLINTV</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

315 <Hsp_midline>E FR + +EAI IS ++ + +++ W + A E I+ ETVWNAI T + TVM A+ +V T W+ I ++ V+N I +V+ + L + ++ AV I+G SG T+ V +IW GIK+ V + D +V F + F+K++ WG I +G + D +K V+N I + W + +Q + I V +A+++ A + IS+ + + V+T++ G++ + +KTVW+ A A A + I +T + I I A E I+ + W A+++ +S +GIK + W +K I IKS + T W + + A+N IKS + W+ + + +A+ +K V + W+ + S + + + AV + A ++ ++++ S G DL+ + G+ G LI+ V</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

316 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

317 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

318 <Hsp_num>4</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

319 <Hsp_bit-score>123.249701662589</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

320 <Hsp_score>308</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

321 <Hsp_evalue>1.03039235764918e-25</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

322 <Hsp_query-from>510</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

323 <Hsp_query-to>1859</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

324 <Hsp_hit-from>905</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

325 <Hsp_hit-to>1377</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

326 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

327 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

328 <Hsp_identity>108</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

329 <Hsp_positive>204</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

330 <Hsp_gaps>63</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

331 <Hsp_align-len>493</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

332 <Hsp_qseq>VQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAV--------MQMINGDWSG-------AWETLKGVAGTIWEGIKSLVQVAI--DGLVQIFQTGLA-FLKSIWD-------TVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVT------------GNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLIN------GFVEGVKGAAGRLIDAVGGAVSGAID</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

333 <Hsp_hseq>ISSIWNSIKDHITNTLNAIHAVVSAVWNAISGFISGVLNTISSVVSSIWNGIKNTVTNILNAIKTTVSNIWDSVKNAVTQKITAIKDTIVNGFNAAVNFIKNLGSQAFQWGADIINNIVSGIKNCIGKVADAVKGVANKI----KSFLHFSVPDEGPLADFESWMPDFMQGLADGINANTSVVNDAVNSFAGGLAEKISSVIQNALSNVVTSVQGFMTQVFDTVKTVWTNANAAIDATMSQISSGITSGWKTIVSTIKTALENIRNVITTTWKAVSSVISAALDGIKKIVTVVWTALKNLIKTGQLD-IKSVVTTTWEAVSGVVRTAVNA-----------IKSVVQAVWDAMPDTVRSAMNRVKEAVLSIWDGIKSGIGDRLGGVRDAVVNAMNAVYKAVKDKVNSSWSWGRDLMQNLINGITYMLGSLINTVA----DVARSIWEYLHFSVPEKGALTDVEEWMPDFMKGLAKGINKSKKYVEAAVSGVAD</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

334 <Hsp_midline>+ + W +IK I+ + A+ + V +W + + + I ++WN I+ V ++ A+ V WD + VT + IK + G + IK + +IN SG + +KGVA I KS + ++ +G + F++ + F++ + D V + + G + + I + + NA++ V +Q MT + T TVW + + IS+ + S TI I+T LE I+ V + W+ + +V +A L I +VT G D IK ++ WE + NA IK+ W+ + T+ + M +K + + W+ IK+ I + L ++ A NA N + A+ + + S + NL++ +T +++ V + + ++ ++ G L + F++G+ + V AVSG D</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

335 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

336 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

337 <Hsp_num>5</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

338 <Hsp_bit-score>71.6329584896635</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

339 <Hsp_score>174</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

340 <Hsp_evalue>3.55787431696712e-10</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

341 <Hsp_query-from>486</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

342 <Hsp_query-to>1343</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

343 <Hsp_hit-from>1138</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

344 <Hsp_hit-to>1400</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

345 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

346 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

347 <Hsp_identity>60</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

348 <Hsp_positive>128</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

349 <Hsp_gaps>35</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

350 <Hsp_align-len>292</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

351 <Hsp_qseq>TNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTV--MSVLTTIWGYIQTYLELIKTVWSAAWEIIKA----VFAAILLTIVGLVTGNFDLIKQAISN</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

352 <Hsp_hseq>TMSQISSGITSGWKTIVSTIKTALENIRNVITTTWKAVSSVISAALDGIKKIVTVVWTALKNLIKTGQLDIKSVVTTTWEAVSGVVRTAVNAIKSVV-----------QAVWDAMPDTVRSAMNRVKEAVLSIWDGIKSGIGDRLGGVRDAVVNAM-------NAVYKAVKDKVNSSWSWGR-----------DLMQNLINGITYMLGSLINTVADVARSIWEYLHFSVPEKGALTDVEEWMPDFMKGLAKGINKSKKYVEAAVSGVADAMTLTMQSGLNVDMDGISGAMMN</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

353 <Hsp_midline>T + + + + W+ I S I TA+E + + + W + + + + I++ VW A++ +++T + +V T W+ + VV T +N IK+VV +AV + A +K +IW+GIKS + + G+ + + V+ + V W W + +++QN++ I ++ N ++ VA +IW + +V LT + ++ +++ + + + + ++A V A+ LT+ + + D I A+ N</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

354 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

355 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

356 <Hsp_num>6</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

357 <Hsp_bit-score>53.9137779974652</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

358 <Hsp_score>128</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

359 <Hsp_evalue>7.67706873813937e-05</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

360 <Hsp_query-from>894</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

361 <Hsp_query-to>1883</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

362 <Hsp_hit-from>467</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

363 <Hsp_hit-to>775</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

364 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

365 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

366 <Hsp_identity>73</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

367 <Hsp_positive>133</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

368 <Hsp_gaps>43</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

369 <Hsp_align-len>341</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

370 <Hsp_qseq>IKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKT------VWSAAWEIIKAVFAAILLTIVGLVTG-NFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTI----KSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGI</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

371 <Hsp_hseq>IRSIVS-RIQGLIDKFNALSPATKETIVKV-ALVAATLGPLLVVVGKTMVG-VGKLMQLVANLPTIIASA-----KAAFTSFGAAIGGISAPVVAVIAVVAALVAAFVHLWRTNEDFRNKITAIWEQIKSIFSGFCQGIVDRINALGFDF-----KNITEVIKA----VWDGLCKFLKPIFEGQFQQIANIFKAVTDIILSVLDIFVGIFTGDWSRVWDGIKGIFVAVWNFIKDTLKNALNMICGIFGTDLGEVKEFWVGVW---------------TSIKNFFVNIWNGIKNFISSVLGGIKNFFTTIWTGIKNFFVGIWTAIYSSVSEKINLIKTVITV</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

372 <Hsp_midline>I+S+V I GL+ F K V + A +GP+ + T+ + + +++ N+ T I + A T IS V++V+ + + ++ L +T +A WE IK++F+ IV + FD N E+IK +W+ + FL I+EG + ++ + I +V+ + W+ IK N IK +NA N I T + +K W ++++ F N N +NFIS+ + + G+K + A+ +VS I+ K ++ +</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

373 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

374 </Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

375 </Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

376 <Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

377 <Hit_num>6</Hit_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

378 <Hit_id>gi|153811333|ref|ZP_01964001.1|</Hit_id>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

379 <Hit_def>hypothetical protein RUMOBE_01725 [Ruminococcus obeum ATCC 29174] >gi|149832460|gb|EDM87544.1| hypothetical protein RUMOBE_01725 [Ruminococcus obeum ATCC 29174]</Hit_def>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

380 <Hit_accession>ZP_01964001</Hit_accession>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

381 <Hit_len>1228</Hit_len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

382 <Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

383 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

384 <Hsp_num>1</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

385 <Hsp_bit-score>219.934795217844</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

386 <Hsp_score>559</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

387 <Hsp_evalue>8.08889755547188e-55</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

388 <Hsp_query-from>108</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

389 <Hsp_query-to>1847</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

390 <Hsp_hit-from>493</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

391 <Hsp_hit-to>1073</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

392 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

393 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

394 <Hsp_identity>176</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

395 <Hsp_positive>285</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

396 <Hsp_gaps>81</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

397 <Hsp_align-len>621</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

398 <Hsp_qseq>ADIKGLLSNLGETIQNFVRNVKNVVLTIWDNL-PLAPWQKW----LGLIAVAAGPFLMLLGXXXXXXXXXXXXXXXXXXXXNWFHLLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKT-------TVSNAITAVWE-IIQNI---MTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELI----KTVWS-------AAWEIIK-AVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIW------------EGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTS-ISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

399 <Hsp_hseq>SQLQELAISFGEILMPKIRDIVTHIQNFVDKLNAMDEGQKETILRIGMFVAALAPMLMGLGKVITFSANVSRALGTLSAG-----LVKAGG--FSGVFTKALGLI---TSPAAIVVGVIAAITAVIIHLWNTNEDFRNTITAIWQKIKDAFTTFAAGI---------------SERLSALGITFSDVTSAIKTIWDGFCNLLAPVLEAAFSTIAIALQTAFNVI-----------LGIWDVFSAVFSGDWSGAWEAIKGIFSSIWDGLKEYFSTIIGAVKGVADVFLGWFGTNWETVWNGVKTFFEGIWNGISSFFEGIWNGISTFCTTVWNGIVTNVTAFCTTVHDTISTIFNAVKDVVSNVWETIKNVVQVAIMFIVEVVKAAFELITVPFRFIWENCRDTIISVWETIKSAVQTAINFVKDNIITPVMNAISATITTVWNAIQTTFTTVINAIKSAVQTAWNFMKDNVVTPVMNAISTTISTVWNTIKTTFTTVINAIKSAVQTAWNFMKNSVITPVMNGIKTVITTVWNAIKTAVQTVVNAIKTTVQTVFNAVKTTVTT----IWNAIKTGTSTAWNAVKTAVTTPINAAKSAVTSAINGIKSTISSVWNSVKSATS</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

400 <Hsp_midline>+ ++ L + GE + +R++ + D L + QK +G+ A P LM LG + + V +S L+ +GG S +F K +G+I ++P V+GVIAA+ A + L+NTNE+FR + A W+ IK A +T + +E + T V +AI+T+ + L P+++ A+ I + T NVI LGI + +GDWSGAWE +KG+ +IW+G+K I + + L + + W+TVW + IW+ I + +S T VW I+ N+ T++ T T++NA+ V SN+W I V + I ++ ELI + +W + WE IK AV AI ++T + I I+ W I+T + + NAI + + W I T ST W IKTT + V+ IKS ++TAWN +K S I+ +N IK+ WN IK+A+ T + IK+TV +N + +TVT I +A++TG A NA + ++ I+ + + G+K + ++V A S</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

401 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

402 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

403 <Hsp_num>2</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

404 <Hsp_bit-score>195.667221935051</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

405 <Hsp_score>496</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

406 <Hsp_evalue>1.63364171761813e-47</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

407 <Hsp_query-from>519</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

408 <Hsp_query-to>1760</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

409 <Hsp_hit-from>709</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

410 <Hsp_hit-to>1099</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

411 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

412 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

413 <Hsp_identity>127</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

414 <Hsp_positive>197</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

415 <Hsp_gaps>51</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

416 <Hsp_align-len>428</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

417 <Hsp_qseq>AWEAIKSAISTAVEAVVSFVMDLWGQM-------VAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWE-IIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQT-----YLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKT-SEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAIS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

418 <Hsp_hseq>AWEAIKGIFSSIWDGLKEYFSTIIGAVKGVADVFLGWFGTNWE-------TVWNGVKTFFEGIWNGISSFFEGIWNGISTFCTTVWNGIVTNVTAFCTTVHDTISTIFNAV-----------KDVVSNVWETIKNVVQVAIMFIVEVVKAAFELITVPFRFIWENCRDTIISVWETIKSAVQTAINFVKDNIITPVMNAISATITTVWNAIQTT----FTTVINAIKSAVQTAWNFMKDNVVTPVMNAISTTISTVWNTIKTTFTTVI-----------NAIKSAVQTAWNFMKNSVITPVMNGIKTVITTVWNAIKTAVQTVVNAIKTTVQTVFNAVKTTVTTIWNAIKTGTSTAWNAVKTAVTTPINAAKSAVTSAINGIKSTISSVWNSVKSATSSTWNAIKRAITT----PINAAKTAVGNAIS</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

419 <Hsp_midline>AWEAIK S+ + + + + G + + W+ N E TVWN ++T E + + + W+ I TTV N I T V V I + + K V +WE IK++VQVAI +V++ + + + +W + +W+ IK+ V AI V + II +M +I T TVWNAI T +T + + S + T W +++ + I T S W IK F ++ + IK A+ AW +K + + N I T ++ +W IKTA T IKTT+ V +K+ + T WN IKT S A N +K+A N KSA+++AI IKST+S+ WN++ S ++ I A+ T +NAA+ + NAIS</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

420 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

421 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

422 <Hsp_num>3</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

423 <Hsp_bit-score>169.473650772671</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

424 <Hsp_score>428</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

425 <Hsp_evalue>1.25373984602686e-39</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

426 <Hsp_query-from>498</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

427 <Hsp_query-to>1640</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

428 <Hsp_hit-from>746</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

429 <Hsp_hit-to>1096</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

430 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

431 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

432 <Hsp_identity>115</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

433 <Hsp_positive>178</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

434 <Hsp_gaps>50</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

435 <Hsp_align-len>391</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

436 <Hsp_qseq>FRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLK-SIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWD--------TVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIK-TVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSN</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

437 <Hsp_hseq>FGTNWETVWNGVKTFFEGIWNGISSFFEGIWNGISTF-----------CTTVWNGIVTNVTAFCTTVHDTISTIFNAVKDVVSNVWETIKNVVQVAIMFIVEVVKAAFELITVPFRFIWENCRDTIISVWETIKSAVQTAIN-----------FVKDNIITPVMNAISATITTVWNAIQTTFTTVINA-------IKSAVQTAWNFMKDNVVTPVMNAISTTISTVWNTIKTTFTTVINAIKSAVQTAWNFMKNSVITPVMNGIKTVITTVWNAIKTAVQTVVNAIKTTVQTVFNAVKTTVTTIWNA-----------IKTGTSTAWNAVKTAVTTPINAAKSAVTSAINGIKSTISSVWNSVKSATSSTWNAIKRAITTPINAAKTAVGN</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

438 <Hsp_midline>F T + W +K+ + SF +W + + TVWN I T V T + + T ++ + VV+ V IK VV + ++ ++KA ++I + WE + ++WE IKS VQ AI+ F+K +I V I A + +W+ I+TT + I A I +++QT W+ V NAIST S +W I TT +V+ I +QT +K +V + IK V + I V + IK + + +KT + IWNA IKT STAW +KT ++ + KS + +A N IK++IS+ N++KSA + WN IK AI+T I K+ V N</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

439 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

440 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

441 <Hsp_num>4</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

442 <Hsp_bit-score>118.242107175663</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

443 <Hsp_score>295</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

444 <Hsp_evalue>3.31465838308759e-24</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

445 <Hsp_query-from>492</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

446 <Hsp_query-to>1256</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

447 <Hsp_hit-from>854</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

448 <Hsp_hit-to>1111</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

449 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

450 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

451 <Hsp_identity>71</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

452 <Hsp_positive>119</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

453 <Hsp_gaps>23</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

454 <Hsp_align-len>268</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

455 <Hsp_qseq>EEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILA-VVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKG------------VAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEI</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

456 <Hsp_hseq>ENCRDTIISVWETIKSAVQTAINFVKDNII----------TPVMNAISATITTVWNAIQTTFTTVINAIKSAVQTAWNFMKDNVVTPVMNAISTTISTVWNTIKTTFTTVINAIKSAVQTAWNFMKNSVITPVMNGIKTVITTVWNAIKTAVQTVVNAIKTTVQTVFNAVKTTVTTIWNAIKTGTSTAWNAVKTAVTTPINAAKSAVTSAINGIKSTISSVWNSVKSATSSTWNAIKRAITTPINAAKTAVGNAISAIRSKFNFSWSL</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

457 <Hsp_midline>E R + + WE IKSA+ TA+ V ++ I T TVWNAI+T TV+ A+ VQTAW+ + VVT V+N I T + T + V+ I AW +K V T+W IK+ VQ ++ + QT +K+ T+W I W+ +KT V+ I A + + + I++T +VWN++ + S+ W AI + + + + + I++ ++ +W +</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

458 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

459 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

460 <Hsp_num>5</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

461 <Hsp_bit-score>116.316109296076</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

462 <Hsp_score>290</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

463 <Hsp_evalue>1.25956884194974e-23</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

464 <Hsp_query-from>510</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

465 <Hsp_query-to>1385</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

466 <Hsp_hit-from>816</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

467 <Hsp_hit-to>1110</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

468 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

469 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

470 <Hsp_identity>83</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

471 <Hsp_positive>132</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

472 <Hsp_gaps>25</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

473 <Hsp_align-len>306</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

474 <Hsp_qseq>VQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVET------------VMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVL-GIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQ-IFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWN</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

475 <Hsp_hseq>VSNVWETIKNVVQVAIMFIVEVVKAAFELITVPFRFIWENCRDTIISVWETIKSAVQTAINFVKDNIITPVMNAISATITTVWNAIQTTFTTVINAIKSAVQTAWNFMKDNVVTPVMNAISTTISTVWNTIKTTFTTVINAIKSAVQTAWNFMKNSVITPVMNGIKTVITTVWNAIKTAVQTVVNAIKTTVQTVFNAVKTTVTTIWNAIKTGTSTAWNAVKTAVTTPINAAKSAVTSAINGIKSTISSVWNSVKSATSSTWNAIKRA-----------ITTPINAAKTAVGNAISAIRSKFNFSWS</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

476 <Hsp_midline>V WE IK+ + A+ +V V + + + E R T +VW I++ V+T VM A+ + T W+ I TTV+N IK+ V T + ++ VM I+ S W T+K T+ IKS VQ A + + + + +K++ TVW I V + + IKTTV AV + I +I+T T WNA+ T + A + V S + I I + +K+ S+ W IK +T + K A+ NA I++K + W+</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

477 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

478 </Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

479 </Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

480 <Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

481 <Hit_num>7</Hit_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

482 <Hit_id>gi|262113750|emb|CAR95417.1|</Hit_id>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

483 <Hit_def>hypothetical protein [Streptococcus phage phi-m46.1]</Hit_def>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

484 <Hit_accession>CAR95417</Hit_accession>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

485 <Hit_len>952</Hit_len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

486 <Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

487 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

488 <Hsp_num>1</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

489 <Hsp_bit-score>218.779196490092</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

490 <Hsp_score>556</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

491 <Hsp_evalue>1.80201837527491e-54</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

492 <Hsp_query-from>384</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

493 <Hsp_query-to>1241</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

494 <Hsp_hit-from>540</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

495 <Hsp_hit-to>818</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

496 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

497 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

498 <Hsp_identity>110</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

499 <Hsp_positive>166</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

500 <Hsp_gaps>7</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

501 <Hsp_align-len>286</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

502 <Hsp_qseq>FAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

503 <Hsp_hseq>FLPIVGIIVGIVAAI-------TLLIVGLKELWTNHEGFRTAVTEIWNSIYAFLSMIIQQISSFVMSVWGTLTTWWTENQQLILNAATTVWNAITTVIQTVMTILGPLIQASWENIKLIITAAWEMIKIVVETAINVVLGIIKAVMQVITGDWTGAWETIKQVLSMAWEGIKSLISLALNFIAQYISTAWTGIKNTISNVLSAISSVISSIWTAIQSTISSVLSAIGSTVSTIWNGISNTVSNILNGISNTVSSVWNGVKNTISNAINGARDAVSNAINAIKNLFN</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

504 <Hsp_midline>F +VGII GI A I L+ G L+ +E FRT V W +I + +S ++ + SFVM +WG + WW ENQ+LI A TVWNAI TV++TVMT L P++Q +W+ I ++T +IK VV+T + VVLGIIKAVMQ+I GDW+GAWET+K V WEGIKSL+ +A++ + Q T +K+ V I +V+ IW I++T+S+ ++A+ + I I T + N IS S++W + T+ + + + + IK +++</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

505 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

506 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

507 <Hsp_num>2</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

508 <Hsp_bit-score>171.784848228175</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

509 <Hsp_score>434</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

510 <Hsp_evalue>2.526199638793e-40</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

511 <Hsp_query-from>657</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

512 <Hsp_query-to>1871</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

513 <Hsp_hit-from>460</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

514 <Hsp_hit-to>858</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

515 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

516 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

517 <Hsp_identity>122</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

518 <Hsp_positive>198</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

519 <Hsp_gaps>18</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

520 <Hsp_align-len>411</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

521 <Hsp_qseq>NAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNV---IKTVVD--TGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDW-AKG</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

522 <Hsp_hseq>NALAAIGQPILEMLIPVFQSLADIVSQLATWFTNLSSPIKEVVIIFTGILAVVGMLLPVFLGLQVAAAAMGTTVVGMITAFLPIVGIIV-----GIVAAITLLIVGLKELWTNHEGFRTAVT-EIWNSIYAFLSMIIQQISSFVMSVWGTLTTWWTENQQLILNAATTVWNAITTVIQTVMTILGPLIQASWENIKLIITAAWEMIKIVVETAINVVLGIIKAVMQVITGDWTGAWETIKQVLSMAWEGIKSLISLALNFIAQYISTAWTGIKNTISNVLSAISSVISSIWTAIQSTISSVLSAIGSTVSTIWNGISNTVSNILNGISNTVSSVWNGVKNTISNA----INGARDAVSNAINAIKNLFNFQIRWPHIPLPHF--RVSGSANPLDWLKGGIPRISIDWYAKG</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

523 <Hsp_midline>NA+ + + ++ LIP+ Q+ D++ + T N+ IK VV TG+ V+G++ V + + T+ G+ + +V G+V + LK +W G AV IW+ I +S I + + ++ ++ T W I A+ +W AI+T + +V+T + IQ E IK + +AAWE+IK V + ++G++ +I + AWE IK S W I + +S I STAW IK TISNV++ I S I + W I+++IS+ L+ I S WN I + +S + I +TVS+ WN + +T++NA ++ R NA+NA +N + I + F V G+A L GG +IDW AKG</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

524 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

525 </Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

526 </Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

527 <Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

528 <Hit_num>8</Hit_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

529 <Hit_id>gi|77411259|ref|ZP_00787609.1|</Hit_id>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

530 <Hit_def>tail tape meausure protein [Streptococcus agalactiae CJB111] >gi|77162685|gb|EAO73646.1| tail tape meausure protein [Streptococcus agalactiae CJB111]</Hit_def>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

531 <Hit_accession>ZP_00787609</Hit_accession>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

532 <Hit_len>1039</Hit_len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

533 <Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

534 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

535 <Hsp_num>1</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

536 <Hsp_bit-score>215.697599882754</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

537 <Hsp_score>548</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

538 <Hsp_evalue>1.52550005815421e-53</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

539 <Hsp_query-from>387</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

540 <Hsp_query-to>1241</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

541 <Hsp_hit-from>628</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

542 <Hsp_hit-to>905</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

543 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

544 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

545 <Hsp_identity>106</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

546 <Hsp_positive>170</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

547 <Hsp_gaps>7</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

548 <Hsp_align-len>285</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

549 <Hsp_qseq>AKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

550 <Hsp_hseq>APIVGIILGVIAVV-------ALLVVGIQQLWQHHEGFRTAVTEIWNAIYAFLSVIIQQISSFVMSIWGTLTTWWTENQQLILNAANTVWTAISTVIQTIMTILGPYLQASWENIKLIITTAWDIIKVVVETAINVVLGIIKAVMQIITGDWSGAWETIKQVVSTVWEAIKSLISIVLSAIAQFISNSWNGIKGTMTNLLNSIKSVVSNVWNSIKSTISSILSSIGSTVSSVWNGMKATISGVLSGISNTVSSVWNGVKSTITNAINGAKNAVSSAINAIKNLFN</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

551 <Hsp_midline>A +VGII G+ A + A LV G L+ +E FRT V W AI + +S ++ + SFVM +WG + WW ENQ+LI A TVW AI TV++T+MT L P +Q +W+ I ++TT ++IK VV+T + VVLGIIKAVMQ+I GDWSGAWET+K V T+WE IKSL+ + + + Q +K + +I +VV +W+ IK+T+S+ ++++ + ++ ++ T V + IS S++W + +T+ + + + + + IK +++</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

552 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

553 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

554 <Hsp_num>2</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

555 <Hsp_bit-score>172.55524738001</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

556 <Hsp_score>436</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

557 <Hsp_evalue>1.48099780677056e-40</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

558 <Hsp_query-from>660</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

559 <Hsp_query-to>1871</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

560 <Hsp_hit-from>548</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

561 <Hsp_hit-to>945</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

562 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

563 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

564 <Hsp_identity>114</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

565 <Hsp_positive>199</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

566 <Hsp_gaps>12</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

567 <Hsp_align-len>407</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

568 <Hsp_qseq>AIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVA--IDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDW-AKG</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

569 <Hsp_hseq>AMAEMGDAIAATLAPILEILASLLQAVATWFSGLSEPVKQ--FIVIVGSLVAALGLVLPIFIALQAAAMAMGTTIMGMITAAAPIVGIILGVIAVVALLVVGIQQLWQHHEGFRTAVT-EIWNAIYAFLSVIIQQISSFVMSIWGTLTTWWTENQQLILNAANTVWTAISTVIQTIMTILGPYLQASWENIKLIITTAWDIIKVVVETAINVVLGIIKAVMQIITGDWSGAWETIKQVVSTVWEAIKSLISIVLSAIAQFISNSWNGIKGTMTNLLNSIKSVVSNVWNSIKSTISSILSSIGSTVSSVWNGMKATISGVLSGISNTVSSVWNGVKSTITNA----INGAKNAVSSAINAIKNLFNFKIKWPHIPLPHF--SVSGSANPLDWLKGGLPKISIQWYAKG</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

570 <Hsp_midline>A+ + + + L PI++ L+ AV T + + V V++G + A + ++ + + TI I + + I G++ + + ++ +W G AV IW+ I +S I + + +I ++ T W I A+ +WTAIST + +++T + Y+Q E IK + + AW+IIK V + ++G++ +I S AWE IK S +W AI + +S + I S +W IK T++N++ +IKS + WN+IK++IS+ L++I S + WN +K+ IS + I +TVS+ WN + ST+TNA ++ + +A+NA +N + I + F V G+A L GG +I W AKG</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

571 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

572 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

573 <Hsp_num>3</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

574 <Hsp_bit-score>83.5741453431014</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

575 <Hsp_score>205</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

576 <Hsp_evalue>9.04763716179523e-14</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

577 <Hsp_query-from>978</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

578 <Hsp_query-to>1877</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

579 <Hsp_hit-from>540</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

580 <Hsp_hit-to>882</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

581 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

582 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

583 <Hsp_identity>81</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

584 <Hsp_positive>141</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

585 <Hsp_gaps>67</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

586 <Hsp_align-len>355</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

587 <Hsp_qseq>TVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVAS---------NIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGL--VTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKT-----------AASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAI-----------STAIENIKSTV----------------------SNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLL</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

588 <Hsp_hseq>TAQNTAKLAMAEMGDAIAATLAPILEILASLLQAVATWFSGLSEPVKQFIVIVGSLVAALGLVLPIFIALQAAAMAMGTTIMGMITAAAPIVG--------IILGVIAVVALLVVGIQQLWQHHEGFRTAVTEIWNAIYAFLSVIIQQISSFVMSIWGTLTTWWTENQQLILNAANTVWTAISTVIQTIMTILGPYLQASWENIKLIITTAWDIIKVVVETAINVVLGIIKAVMQIITGDWSGAWETIKQVVSTVWEAIKSLISIVLSAIAQFISNSWNGIKGTMTN----LLNSIKSVVSNVWNSIKSTISSILSSIGSTVSSVWNGMKATISGVLSGISNTVSSVWNGVKSTI</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

589 <Hsp_midline>T T + + D I T++ + + ++Q + T + V I V S I+ A+ M++ TTI G I ++ II V A + L +VG+ + + + + A++ W I S I I++F+ IW + T AA+T W I T I +MT + ++ +W NIK I+ A + IK E A N + I S A E IK V SN WN + T+TN +++++++ N N+ ++ IS+ +S G ++ G+K ++ + VS + K +</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

590 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

591 </Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

592 </Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

593 <Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

594 <Hit_num>9</Hit_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

595 <Hit_id>gi|76786754|ref|YP_329383.1|</Hit_id>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

596 <Hit_def>prophage LambdaSa04, TP901 family tail tape measure protein [Streptococcus agalactiae A909] >gi|76561811|gb|ABA44395.1| prophage LambdaSa04, tail tape measure protein, TP901 family [Streptococcus agalactiae A909]</Hit_def>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

597 <Hit_accession>YP_329383</Hit_accession>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

598 <Hit_len>1039</Hit_len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

599 <Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

600 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

601 <Hsp_num>1</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

602 <Hsp_bit-score>213.386402427249</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

603 <Hsp_score>542</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

604 <Hsp_evalue>7.57097807573937e-53</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

605 <Hsp_query-from>387</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

606 <Hsp_query-to>1241</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

607 <Hsp_hit-from>628</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

608 <Hsp_hit-to>905</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

609 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

610 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

611 <Hsp_identity>105</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

612 <Hsp_positive>169</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

613 <Hsp_gaps>7</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

614 <Hsp_align-len>285</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

615 <Hsp_qseq>AKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

616 <Hsp_hseq>APIVGIILGVIAVV-------ALLVVGIQQLWQHHEGFRTAVTEIWNAIYAFLTVIIQQISSFVMSIWGTLITWWTENQQLILNATNTVWTAISTVIQTIMTILAPYLQASWENIKLIITTAWDIIKVVVETAINVVLGIIKAVMQIITGDWSGAWETIKQVVSTVWEVIKSLISIVLSAIAQFISNSWNGIKGTMTNLLNSIKGVVSNVWNGIKSTISSILSSIGSTVSSIWNGMKATISGVLSGISSTVSFVWNGVKSTITNAINGAKNAVSSAINAIKNLFN</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

617 <Hsp_midline>A +VGII G+ A + A LV G L+ +E FRT V W AI + ++ ++ + SFVM +WG ++ WW ENQ+LI TVW AI TV++T+MT L P +Q +W+ I ++TT ++IK VV+T + VVLGIIKAVMQ+I GDWSGAWET+K V T+WE IKSL+ + + + Q +K + +I VV +W+ IK+T+S+ ++++ + +I ++ T V + IS+ S +W + +T+ + + + + + IK +++</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

618 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

619 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

620 <Hsp_num>2</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

621 <Hsp_bit-score>164.851255861663</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

622 <Hsp_score>416</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

623 <Hsp_evalue>3.08806866621938e-38</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

624 <Hsp_query-from>660</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

625 <Hsp_query-to>1871</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

626 <Hsp_hit-from>548</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

627 <Hsp_hit-to>945</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

628 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

629 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

630 <Hsp_identity>111</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

631 <Hsp_positive>194</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

632 <Hsp_gaps>12</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

633 <Hsp_align-len>407</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

634 <Hsp_qseq>AIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVA--IDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDW-AKG</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

635 <Hsp_hseq>AMAEMGDAIAATLAPILEVIASLLQAVATWFSGLSEPVKQ--FIVIVGSLVAALGLVLPIFIALQAAAMAMGTTIMGMITAAAPIVGIILGVIAVVALLVVGIQQLWQHHEGFRTAVT-EIWNAIYAFLTVIIQQISSFVMSIWGTLITWWTENQQLILNATNTVWTAISTVIQTIMTILAPYLQASWENIKLIITTAWDIIKVVVETAINVVLGIIKAVMQIITGDWSGAWETIKQVVSTVWEVIKSLISIVLSAIAQFISNSWNGIKGTMTNLLNSIKGVVSNVWNGIKSTISSILSSIGSTVSSIWNGMKATISGVLSGISSTVSFVWNGVKSTITNA----INGAKNAVSSAINAIKNLFNFKIKWPHIPLPHF--SVSGSANPLDWLKGGLPKISIQWYAKG</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

636 <Hsp_midline>A+ + + + L PI++ L+ AV T + + V V++G + A + ++ + + TI I + + I G++ + + ++ +W G AV IW+ I ++ I + + +I ++ T W I + +WTAIST + +++T + Y+Q E IK + + AW+IIK V + ++G++ +I S AWE IK S +W I + +S + I S +W IK T++N++ +IK + WN IK++IS+ L++I S + WN +K+ IS + I STVS WN + ST+TNA ++ + +A+NA +N + I + F V G+A L GG +I W AKG</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

637 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

638 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

639 <Hsp_num>3</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

640 <Hsp_bit-score>115.160510568324</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

641 <Hsp_score>287</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

642 <Hsp_evalue>2.80602663410135e-23</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

643 <Hsp_query-from>543</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

644 <Hsp_query-to>1391</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

645 <Hsp_hit-from>637</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

646 <Hsp_hit-to>900</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

647 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

648 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

649 <Hsp_identity>70</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

650 <Hsp_positive>130</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

651 <Hsp_gaps>19</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

652 <Hsp_align-len>283</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

653 <Hsp_qseq>ISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAI</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

654 <Hsp_hseq>VIAVVALLVVGIQQLW--------QHHEGFRTAVTEIWNAIYAFLTVIIQQISSFVMSIWGTLITWWTENQQLILNATNTVWTAISTVIQTIMTILAPYLQASWENIKLIITTAWDIIKVVVETAINVVLGIIKAVMQIITGDWSGAWETIKQVVSTVWEVIKSLISIVLSAIAQFISNSWNGIKGTMTNLLNSIKGVVSNVWNGIKSTISSILSSIGSTV-----------SSIWNGMKATISGVLSGISSTVSFVWNGVKSTITNAINGAKNAVSSAINAI</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

655 <Hsp_midline>+ V +V + LW ++ E R +WNAI + ++ + V + W ++ T +I +T + +I+ +M ++ +WE +K + T W+ IK +V+ AI+ ++ I + + + W W TI VV +W+ IK+ +S ++A+ + I N I+ T + N+I V SN+W I +T+ S+L++I + S+ W +KA + +L I V+ ++ +K I+NA K S NAI</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

656 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

657 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

658 <Hsp_num>4</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

659 <Hsp_bit-score>82.4185466153494</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

660 <Hsp_score>202</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

661 <Hsp_evalue>2.01560327678347e-13</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

662 <Hsp_query-from>978</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

663 <Hsp_query-to>1847</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

664 <Hsp_hit-from>540</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

665 <Hsp_hit-to>850</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

666 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

667 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

668 <Hsp_identity>74</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

669 <Hsp_positive>133</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

670 <Hsp_gaps>45</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

671 <Hsp_align-len>323</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

672 <Hsp_qseq>TVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVAS---------NIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGL--VTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKT-----------AASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAI-----------STAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

673 <Hsp_hseq>TAQNTAKLAMAEMGDAIAATLAPILEVIASLLQAVATWFSGLSEPVKQFIVIVGSLVAALGLVLPIFIALQAAAMAMGTTIMGMITAAAPIVG--------IILGVIAVVALLVVGIQQLWQHHEGFRTAVTEIWNAIYAFLTVIIQQISSFVMSIWGTLITWWTENQQLILNATNTVWTAISTVIQTIMTILAPYLQASWENIKLIITTAWDIIKVVVETAINVVLGIIKAVMQIITGDWSGAWETIKQVVSTVWEVIKSLIS----IVLSAIAQFISNSWNGIKGTMTNLLNSIKGVVSNVWNGIKSTISSILSSIGSTVS</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

674 <Hsp_midline>T T + + D I T++ + + ++Q + T + V I V S I+ A+ M++ TTI G I ++ II V A + L +VG+ + + + + A++ W I + I I++F+ IW + T A +T W I T I +MT + ++ +W NIK I+ A + IK E A N + I S A E IK VS W + S ++ ++SA+ N+ N + ++N ++ +++ G+K ++ ++G VS</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

675 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

676 </Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

677 </Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

678 <Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

679 <Hit_num>10</Hit_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

680 <Hit_id>gi|50914476|ref|YP_060448.1|</Hit_id>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

681 <Hit_def>unknown phage protein [Streptococcus pyogenes MGAS10394] >gi|40218580|gb|AAR83234.1| prophage pi2 protein [Streptococcus pyogenes] >gi|50261625|gb|AAT72393.1| unknown [Streptococcus pyogenes] >gi|50903550|gb|AAT87265.1| unknown phage protein [Streptococcus pyogenes MGAS10394]</Hit_def>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

682 <Hit_accession>YP_060448</Hit_accession>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

683 <Hit_len>1039</Hit_len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

684 <Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

685 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

686 <Hsp_num>1</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

687 <Hsp_bit-score>207.608408788489</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

688 <Hsp_score>527</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

689 <Hsp_evalue>4.15433379501178e-51</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

690 <Hsp_query-from>372</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

691 <Hsp_query-to>1241</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

692 <Hsp_hit-from>623</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

693 <Hsp_hit-to>905</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

694 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

695 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

696 <Hsp_identity>104</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

697 <Hsp_positive>166</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

698 <Hsp_gaps>7</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

699 <Hsp_align-len>290</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

700 <Hsp_qseq>LSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWS</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

701 <Hsp_hseq>LVVAAAPIVGTVLGIIAVI-------TLLVVWIQELWQNNEGFRTAVIEIWNAIYAFISVIIQEISTFIMTIWGTLTTWWTENQALIQAAVETVWNAISTVIQTVMSLIGPYLEAAWANIQLIITTAWEIIKTVVETAITVVLGIIKAIMQAITGDWSGAWETIKGVLQRVWQAIQQIVTTILSAIGQFISNTWNGIKNTFSNILSAISGIVSSIWNTIKSVISSVISSIVSFVSSGWSGIQQTISSILSGISSTVSSVWNGIKNSISNAINGAKNVVSSAINAIKNLFN</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

702 <Hsp_midline>L V A +VG + GI A I LV L+ NE FRT V W AI + IS ++ + +F+M +WG + WW ENQ LI+ ETVWNAI TV++TVM+ + P ++ AW I ++TT +IKTVV+T + VVLGIIKA+MQ I GDWSGAWET+KGV +W+ I+ +V + + Q +K+ + + I +V IW+ IK+ +S+ I+++ + + + IQ T ++ + IS+ S++W I ++ + + + + + IK +++</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

703 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

704 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

705 <Hsp_num>2</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

706 <Hsp_bit-score>155.221266463729</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

707 <Hsp_score>391</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

708 <Hsp_evalue>2.44682334507151e-35</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

709 <Hsp_query-from>660</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

710 <Hsp_query-to>1871</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

711 <Hsp_hit-from>548</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

712 <Hsp_hit-to>945</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

713 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

714 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

715 <Hsp_identity>111</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

716 <Hsp_positive>192</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

717 <Hsp_gaps>20</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

718 <Hsp_align-len>411</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

719 <Hsp_qseq>AIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVA------IDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDW-AKG</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

720 <Hsp_hseq>AMAEVGGVLAEALAPVLELLAQLLQAVANWFSN-LPGPIQTFIVIMGGLITVVGLLLPGLLA-----LQAAAVAMGTTIGGLVVAAAPIVGTVLGIIAVITLLVVWIQELWQNNEGFRTAVI-EIWNAIYAFISVIIQEISTFIMTIWGTLTTWWTENQALIQAAVETVWNAISTVIQTVMSLIGPYLEAAWANIQLIITTAWEIIKTVVETAITVVLGIIKAIMQAITGDWSGAWETIKGVLQRVWQAIQQIVTTILSAIGQFISNTWNGIKNTFSNILSAISGIVSSIWNTIKSVISSVISSIVSFVSSGWSGIQQTISSILSGISSTVSSVWNGIKNSISNA----INGAKNVVSSAINAIKNLFNFKISWPHIPLPHF--SVSGSANPLDWLKGGLPKISIAWYAKG</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

721 <Hsp_midline>A+ V + AL P+++ L+ AV N + + T + ++ G+I V ++ G + L+ A + I LV A + G++ + + +++ +W G AV+ IW+ I +S I + I I ++ T W I +W AIST + +V++ I Y++ I+ + + AWEIIK V + ++G++ I S AWE IK +W AI ++ I I S W IK T SN+++ I + + WN IK+ IS+ +++I S + W+ I+ IS+ + I STVS+ WN + ++++NA ++ + +A+NA +N + IS + F V G+A L GG +I W AKG</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

722 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

723 <Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

724 <Hsp_num>3</Hsp_num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

725 <Hsp_bit-score>121.708903358919</Hsp_bit-score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

726 <Hsp_score>304</Hsp_score>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

727 <Hsp_evalue>2.99798279087674e-25</Hsp_evalue>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

728 <Hsp_query-from>543</Hsp_query-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

729 <Hsp_query-to>1673</Hsp_query-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

730 <Hsp_hit-from>637</Hsp_hit-from>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

731 <Hsp_hit-to>1004</Hsp_hit-to>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

732 <Hsp_query-frame>3</Hsp_query-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

733 <Hsp_hit-frame>0</Hsp_hit-frame>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

734 <Hsp_identity>89</Hsp_identity>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

735 <Hsp_positive>168</Hsp_positive>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

736 <Hsp_gaps>29</Hsp_gaps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

737 <Hsp_align-len>387</Hsp_align-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

738 <Hsp_qseq>ISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSG--IWEGIK------TAASTAWEWIKTTISNVMTT--IKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTN</Hsp_qseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

739 <Hsp_hseq>IIAVITLLVVWIQELW--------QNNEGFRTAVIEIWNAIYAFISVIIQEISTFIMTIWGTLTTWWTENQALIQAAVETVWNAISTVIQTVMSLIGPYLEAAWANIQLIITTAWEIIKTVVETAITVVLGIIKAIMQAITGDWSGAWETIKGVLQRVWQAIQQIVTTILSAIGQFISNTWNGIKNTFSNILSAISGIVSSIWNTIKSVISSVISSIVSFV-----------SSGWSGIQQTISSILSGISSTVSSVWNGIKNSISNAINGAKNVVSSAINAIKNLFNFKISWPHIPLPHFSVSGSANPLDWLKGGLPKISIAWYAKGGILTKPTAFGMNEKQLMVGGEAGKEAVLPLTKQNLAAIGEGIASTMGTGGNFINVSITD</Hsp_hseq>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

740 <Hsp_midline>I + +V ++ +LW +N E R +WNAI + ++ + + T W + T +I+ V+T + +I+ VM +I AW ++ + T WE IK++V+ AI ++ I + + + W W TI V+ +W I+ V+ ++A+ + I N I+ T+ + +AIS + S+IW I + + SV+++I ++ S+ W I+ ++IL I V+ ++ IK +ISNA K S NAI + W I + ++ +W+K + + K I T + + ++ E K ++ E I ST+ G N + ++T+</Hsp_midline>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

741 </Hsp>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

742 </Hit_hsps>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

743 </Hit>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

744 </Iteration_hits>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

745 <Iteration_stat>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

746 <Statistics>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

747 <Statistics_db-num>12310662</Statistics_db-num>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

748 <Statistics_db-len>-87459526</Statistics_db-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

749 <Statistics_hsp-len>0</Statistics_hsp-len>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

750 <Statistics_eff-space>1174893963300</Statistics_eff-space>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

751 <Statistics_kappa>0.041</Statistics_kappa>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

752 <Statistics_lambda>0.267</Statistics_lambda>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

753 <Statistics_entropy>0.14</Statistics_entropy>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

754 </Statistics>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

755 </Iteration_stat>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

756 </Iteration>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

757 </BlastOutput_iterations>

45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

peterjc

parents:

diff changeset

758 </BlastOutput>

Mercurial > repos > devteam > blast_datatypes

annotate test-data/blastx_sample.xml @ 2:45ba7c750bc8 draft