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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="bowtie" version="0.12.7">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie/0.12.7/bowtie-0.12.7-src.zip</action>
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7 <action type="shell_command">make</action>
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8 <action type="move_file">
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9 <source>bowtie</source>
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10 <destination>$INSTALL_DIR/bin</destination>
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11 </action>
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12 <action type="move_file">
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13 <source>bowtie-build</source>
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14 <destination>$INSTALL_DIR/bin</destination>
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15 </action>
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16 <action type="move_file">
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17 <source>bowtie-inspect</source>
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18 <destination>$INSTALL_DIR/bin</destination>
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19 </action>
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20 <action type="set_environment">
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21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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22 </action>
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23 </actions>
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24 </install>
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25 <readme>
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26 Compiling Bowtie requires libpthread to be present on your system.
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27 </readme>
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28 </package>
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29 </tool_dependency>
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30
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