Mercurial > repos > devteam > bwa_wrappers

comparison tool_dependencies.xml @ 2:24fa4e22021a draft

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Uploaded updated tool dependency definition.
author devteam
date Tue, 17 Dec 2013 09:20:58 -0500
parents ffa8aaa14f7c
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1:150b3fe44caa 2:24fa4e22021a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="bwa" version="0.5.9"> 3 <package name="bwa" version="0.5.9">
4 <install version="1.0"> 4 <repository changeset_revision="0eb3d3c40344" name="package_bwa_0_5_9" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
5 <actions>
6 <action type="download_by_url">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.9.tar.bz2</action>
7 <action type="shell_command">make</action>
8 <action type="move_file">
9 <source>bwa</source>
10 <destination>$INSTALL_DIR/bin</destination>
11 </action>
12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
14 </action>
15 </actions>
16 </install>
17 <readme>
18 Compiling BWA requires zlib and libpthread to be present on your system.
19 </readme>
20 </package> 5 </package>
21 </tool_dependency> 6 </tool_dependency>