Mercurial > repos > devteam > bwa_wrappers

changeset 2:24fa4e22021a draft

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Uploaded updated tool dependency definition.
author devteam
date Tue, 17 Dec 2013 09:20:58 -0500
parents 150b3fe44caa
children b4427dbb6ced
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 17 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Apr 02 12:23:14 2013 -0400
+++ b/tool_dependencies.xml	Tue Dec 17 09:20:58 2013 -0500
@@ -1,21 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="bwa" version="0.5.9">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.9.tar.bz2</action>
-                <action type="shell_command">make</action>
-                <action type="move_file">
-                    <source>bwa</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-Compiling BWA requires zlib and libpthread to be present on your system.
-        </readme>
+        <repository changeset_revision="0eb3d3c40344" name="package_bwa_0_5_9" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
-</tool_dependency>
\ No newline at end of file
+</tool_dependency>