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annotate count_gff_features.xml @ 0:fabda887a71f draft

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author devteam
date Mon, 28 Jul 2014 11:56:10 -0400
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children 188392a0d0a8
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1 <tool id="count_gff_features" name="Count GFF Features" version="0.1">
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2 <description></description>
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3 <requirements>
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4 <requirement type="package" version="0.7.1">bx-python</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 count_gff_features.py $input &gt; $output
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8 </command>
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9 <inputs>
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10 <param format="gff" name="input" type="data" label="GFF Dataset to Filter"/>
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11 </inputs>
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12 <outputs>
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13 <data format="txt" name="output"/>
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14 </outputs>
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15 <tests>
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16 <test>
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17 <param name="input" value="gff2bed_in2.gff"/>
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18 <output name="output" file="count_gff_features_out1.txt"/>
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19 </test>
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20 <test>
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21 <param name="input" value="gff_filter_by_feature_count_out1.gff"/>
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22 <output name="output" file="count_gff_features_out2.txt"/>
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23 </test>
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24 </tests>
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25 <help>
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26 Counts the number of features in a GFF dataset. GFF features are often spread across multiple lines; this tool counts the number of
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27 features in dataset rather than the number of lines.
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28 </help>
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29 </tool>