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Imported from capsule None
author devteam
date Mon, 28 Jul 2014 11:56:10 -0400
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children 188392a0d0a8
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1 <tool id="count_gff_features" name="Count GFF Features" version="0.1">
2 <description></description>
3 <requirements>
4 <requirement type="package" version="0.7.1">bx-python</requirement>
5 </requirements>
6 <command interpreter="python">
7 count_gff_features.py $input &gt; $output
8 </command>
9 <inputs>
10 <param format="gff" name="input" type="data" label="GFF Dataset to Filter"/>
11 </inputs>
12 <outputs>
13 <data format="txt" name="output"/>
14 </outputs>
15 <tests>
16 <test>
17 <param name="input" value="gff2bed_in2.gff"/>
18 <output name="output" file="count_gff_features_out1.txt"/>
19 </test>
20 <test>
21 <param name="input" value="gff_filter_by_feature_count_out1.gff"/>
22 <output name="output" file="count_gff_features_out2.txt"/>
23 </test>
24 </tests>
25 <help>
26 Counts the number of features in a GFF dataset. GFF features are often spread across multiple lines; this tool counts the number of
27 features in dataset rather than the number of lines.
28 </help>
29 </tool>