Mercurial > repos > devteam > cuffdiff
view test-data/isoforms.fpkm_tracking @ 18:a85acc5199c7 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffdiff commit 80b06e80066b32ad53ed418628992f056444256f
| author | iuc |
|---|---|
| date | Sat, 05 Oct 2024 11:16:01 +0000 |
| parents | 4e6f043995ff |
| children |
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tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage q1_FPKM q1_conf_lo q1_conf_hi q1_status q2_FPKM q2_conf_lo q2_conf_hi q2_status TCONS_00000001 c Xkr4 XLOC_000001 Xkr4 TSS1 chr1:3204754-3204833 79 - 0 0 0 OK 9.45986e+06 0 3.33035e+07 OK TCONS_00000002 - - XLOC_000002 - TSS2 chr1:3111449-3111490 41 - 0 0 0 OK 2.43637e+08 0 9.52723e+08 OK TCONS_00000003 - - XLOC_000003 - TSS3 chr1:3111545-3111576 31 - 0 0 0 OK 0 0 0 OK TCONS_00000009 - - XLOC_000011 - TSS14 chr1:3192441-3192494 53 - 0 0 0 OK 9.7002e+07 0 3.17699e+08 OK TCONS_00000010 - - XLOC_000012 - TSS15 chr1:3192550-3192629 79 - 0 0 0 OK 4.72993e+06 0 1.84961e+07 OK TCONS_00000011 - - XLOC_000014 - TSS17 chr1:3192731-3192811 80 - 0 0 0 OK 0 0 0 OK TCONS_00000012 - - XLOC_000015 - TSS18 chr1:3192940-3193042 102 - 0 0 0 OK 6.86386e+06 0 2.14243e+07 OK TCONS_00000013 - - XLOC_000016 - TSS19 chr1:3194185-3194226 41 - 0 0 0 OK 2.43637e+08 0 9.52723e+08 OK TCONS_00000014 - - XLOC_000017 - TSS20 chr1:3194302-3194329 27 - 0 0 0 OK 0 0 0 OK TCONS_00000015 - - XLOC_000019 - TSS22 chr1:3195083-3195110 27 - 0 0 0 OK 0 0 0 OK TCONS_00000016 - - XLOC_000020 - TSS23 chr1:3195450-3195477 27 - 0 0 0 OK 0 0 0 OK TCONS_00000017 - - XLOC_000021 - TSS24 chr1:3197089-3197116 27 - 0 0 0 OK 0 0 0 OK TCONS_00000018 - - XLOC_000022 - TSS25 chr1:3197246-3197273 27 - 0 0 0 OK 0 0 0 OK TCONS_00000019 - - XLOC_000023 - TSS26 chr1:3197346-3197373 27 - 0 0 0 OK 0 0 0 OK TCONS_00000020 - - XLOC_000025 - TSS28 chr1:3200022-3200191 169 - 826392 0 2.65361e+06 OK 803108 0 2.63033e+06 OK TCONS_00000021 - - XLOC_000026 - TSS29 chr1:3200325-3200352 27 - 0 0 0 OK 0 0 0 OK TCONS_00000022 - - XLOC_000029 - TSS32 chr1:3201077-3201481 404 - 66791.3 0 214473 OK 324548 0 802006 OK TCONS_00000023 - - XLOC_000031 - TSS34 chr1:3201672-3201699 27 - 0 0 0 OK 0 0 0 OK TCONS_00000024 i Xkr4 XLOC_000034 Xkr4 TSS37 chr1:3212213-3212292 79 - 0 0 0 OK 9.45986e+06 0 3.33035e+07 OK TCONS_00000025 i Xkr4 XLOC_000035 Xkr4 TSS38 chr1:3212367-3212439 72 - 0 0 0 OK 2.80837e+07 0 8.76584e+07 OK TCONS_00000026 i Xkr4 XLOC_000037 Xkr4 TSS40 chr1:3213095-3213242 97 - 4.24463e+06 0 1.55814e+07 OK 2.08209e+06 0 8.14187e+06 OK TCONS_00000027 i Xkr4 XLOC_000040 Xkr4 TSS43 chr1:3242633-3242923 290 - 48522.7 0 185766 OK 424400 0 1.30289e+06 OK TCONS_00000028 i Xkr4 XLOC_000042 Xkr4 TSS45 chr1:3243018-3243079 61 - 0 0 0 OK 3.03053e+07 0 1.0669e+08 OK TCONS_00000029 i Xkr4 XLOC_000044 Xkr4 TSS47 chr1:3243347-3243401 54 - 0 0 0 OK 5.79991e+07 0 2.04186e+08 OK TCONS_00000030 i Xkr4 XLOC_000046 Xkr4 TSS49 chr1:3256974-3257011 37 - 0 0 0 OK 2.35423e+09 0 8.28806e+09 OK TCONS_00000031 i Xkr4 XLOC_000048 Xkr4 TSS51 chr1:3277190-3277218 28 - 0 0 0 OK 0 0 0 OK TCONS_00000033 i Xkr4 XLOC_000052 Xkr4 TSS56 chr1:3280686-3280741 55 - 0 0 0 OK 2.61334e+07 0 1.02193e+08 OK TCONS_00000034 i Xkr4 XLOC_000057 Xkr4 TSS61 chr1:3290488-3290553 65 - 0 0 0 OK 1.11503e+07 0 4.36026e+07 OK TCONS_00000037 i Xkr4 XLOC_000060 Xkr4 TSS66 chr1:3299443-3299664 55 - 0 0 163195 OK 0 0 163195 OK TCONS_00000038 i Xkr4 XLOC_000062 Xkr4 TSS68 chr1:3300051-3300078 27 - 0 0 0 OK 0 0 0 OK TCONS_00000039 i Xkr4 XLOC_000065 Xkr4 TSS71 chr1:3318999-3319051 52 - 0 0 0 OK 0 0 0 OK TCONS_00000040 i Xkr4 XLOC_000068 Xkr4 TSS74 chr1:3355887-3356119 27 - 0 0 332434 OK 0 0 0 OK TCONS_00000041 i Xkr4 XLOC_000071 Xkr4 TSS77 chr1:3363214-3363278 64 - 0 0 0 OK 0 0 0 OK TCONS_00000042 i Xkr4 XLOC_000073 Xkr4 TSS79 chr1:3363753-3363849 96 - 0 0 0 OK 0 0 0 OK TCONS_00000043 i Xkr4 XLOC_000075 Xkr4 TSS81 chr1:3367135-3367162 27 - 0 0 0 OK 0 0 0 OK TCONS_00000044 i Xkr4 XLOC_000077 Xkr4 TSS83 chr1:3367333-3367382 49 - 0 0 0 OK 0 0 0 OK TCONS_00000045 i Xkr4 XLOC_000080 Xkr4 TSS86 chr1:3377211-3377262 51 - 0 0 0 OK 0 0 0 OK TCONS_00000046 i Xkr4 XLOC_000083 Xkr4 TSS89 chr1:3391325-3391352 27 - 0 0 0 OK 0 0 0 OK TCONS_00000047 i Xkr4 XLOC_000084 Xkr4 TSS90 chr1:3435841-3435880 39 - 0 0 0 OK 0 0 0 OK TCONS_00000048 i Xkr4 XLOC_000085 Xkr4 TSS91 chr1:3447761-3447788 27 - 0 0 0 OK 0 0 0 OK TCONS_00000049 i Xkr4 XLOC_000086 Xkr4 TSS92 chr1:3450906-3450965 59 - 0 0 0 OK 0 0 0 OK TCONS_00000050 i Xkr4 XLOC_000087 Xkr4 TSS93 chr1:3451051-3451109 58 - 0 0 0 OK 0 0 0 OK TCONS_00000051 - - XLOC_000004 - TSS4 chr1:3174765-3174792 27 - 0 0 0 OK 0 0 0 OK TCONS_00000052 - - XLOC_000005 - TSS5 chr1:3187401-3187428 27 - 0 0 0 OK 0 0 0 OK TCONS_00000053 - - XLOC_000006 - TSS6 chr1:3188521-3188548 27 - 0 0 0 OK 0 0 0 OK TCONS_00000054 - - XLOC_000007 - TSS7 chr1:3189810-3190789 979 - 358326 135086 581565 OK 522345 410780 633911 OK TCONS_00000055 - - XLOC_000008 - TSS10 chr1:3190858-3191434 576 - 408511 54526.1 762496 OK 420354 61509.1 779200 OK TCONS_00000056 - - XLOC_000009 - TSS11 chr1:3191512-3192077 565 - 433286 63552.3 803020 OK 842157 342520 1.34179e+06 OK TCONS_00000057 - - XLOC_000010 - TSS13 chr1:3192250-3192336 86 - 3.44151e+06 0 1.31756e+07 OK 3.34455e+06 0 1.30786e+07 OK TCONS_00000058 - - XLOC_000013 - TSS16 chr1:3192649-3192676 27 - 0 0 0 OK 0 0 0 OK TCONS_00000059 - - XLOC_000018 - TSS21 chr1:3194706-3194733 27 - 0 0 0 OK 0 0 0 OK TCONS_00000060 - - XLOC_000024 - TSS27 chr1:3197425-3197452 27 - 0 0 0 OK 0 0 0 OK TCONS_00000062 - - XLOC_000027 - TSS30 chr1:3200430-3200457 27 - 0 0 0 OK 0 0 0 OK TCONS_00000063 - - XLOC_000028 - TSS31 chr1:3201007-3201039 32 - 0 0 0 OK 0 0 0 OK TCONS_00000065 - - XLOC_000030 - TSS33 chr1:3201596-3201666 70 - 1.6359e+07 0 5.96409e+07 OK 0 0 0 OK TCONS_00000066 - - XLOC_000032 - TSS35 chr1:3201725-3201809 84 - 1.5136e+07 0 4.63396e+07 OK 0 0 0 OK TCONS_00000067 i Xkr4 XLOC_000033 Xkr4 TSS36 chr1:3211521-3211561 40 - 0 0 0 OK 0 0 0 OK TCONS_00000068 i Xkr4 XLOC_000036 Xkr4 TSS39 chr1:3212717-3212801 84 - 3.784e+06 0 1.44868e+07 OK 0 0 0 OK TCONS_00000069 i Xkr4 XLOC_000037 Xkr4 TSS40 chr1:3213095-3213242 124 - 863189 0 4.25222e+06 OK 0 0 72384.9 OK TCONS_00000070 i Xkr4 XLOC_000038 Xkr4 TSS41 chr1:3240606-3240633 27 - 0 0 0 OK 0 0 0 OK TCONS_00000071 i Xkr4 XLOC_000039 Xkr4 TSS42 chr1:3242479-3242512 33 - 0 0 0 OK 0 0 0 OK TCONS_00000072 i Xkr4 XLOC_000041 Xkr4 TSS44 chr1:3242924-3243005 81 - 0 0 0 OK 0 0 0 OK TCONS_00000073 i Xkr4 XLOC_000043 Xkr4 TSS46 chr1:3243108-3243154 46 - 8.616e+07 0 3.29857e+08 OK 0 0 0 OK TCONS_00000074 i Xkr4 XLOC_000045 Xkr4 TSS48 chr1:3254079-3254106 27 - 0 0 0 OK 0 0 0 OK TCONS_00000075 i Xkr4 XLOC_000047 Xkr4 TSS50 chr1:3277155-3277182 27 - 0 0 0 OK 0 0 0 OK TCONS_00000076 i Xkr4 XLOC_000049 Xkr4 TSS52 chr1:3277913-3278390 477 - 228872 0 561229 OK 47662.2 0 156103 OK TCONS_00000077 i Xkr4 XLOC_000050 Xkr4 TSS54 chr1:3280117-3280144 27 - 0 0 0 OK 0 0 0 OK TCONS_00000078 i Xkr4 XLOC_000051 Xkr4 TSS55 chr1:3280498-3280525 27 - 0 0 0 OK 0 0 0 OK TCONS_00000079 i Xkr4 XLOC_000053 Xkr4 TSS57 chr1:3282504-3282531 27 - 0 0 0 OK 0 0 0 OK TCONS_00000080 i Xkr4 XLOC_000054 Xkr4 TSS58 chr1:3282650-3282677 27 - 0 0 0 OK 0 0 0 OK TCONS_00000081 i Xkr4 XLOC_000055 Xkr4 TSS59 chr1:3282760-3282832 72 - 0 0 0 OK 0 0 0 OK TCONS_00000082 i Xkr4 XLOC_000056 Xkr4 TSS60 chr1:3284966-3284993 27 - 0 0 0 OK 0 0 0 OK TCONS_00000083 i Xkr4 XLOC_000058 Xkr4 TSS62 chr1:3290798-3290859 61 - 1.55919e+07 0 5.96926e+07 OK 0 0 0 OK TCONS_00000084 i Xkr4 XLOC_000059 Xkr4 TSS63 chr1:3290919-3291273 354 - 294879 0 740137 OK 85971.3 0 281572 OK TCONS_00000085 i Xkr4 XLOC_000060 Xkr4 TSS65 chr1:3299443-3299664 197 - 807732 0 2.39056e+06 OK 156995 0 613917 OK TCONS_00000086 i Xkr4 XLOC_000061 Xkr4 TSS67 chr1:3299691-3299733 42 - 0 0 0 OK 0 0 0 OK TCONS_00000087 i Xkr4 XLOC_000063 Xkr4 TSS69 chr1:3307748-3307775 27 - 0 0 0 OK 0 0 0 OK TCONS_00000088 i Xkr4 XLOC_000064 Xkr4 TSS70 chr1:3318620-3318647 27 - 0 0 0 OK 0 0 0 OK TCONS_00000089 i Xkr4 XLOC_000066 Xkr4 TSS72 chr1:3330527-3330554 27 - 0 0 0 OK 0 0 0 OK TCONS_00000090 i Xkr4 XLOC_000067 Xkr4 TSS73 chr1:3351240-3351311 71 - 7.68169e+06 0 2.94088e+07 OK 0 0 0 OK TCONS_00000091 i Xkr4 XLOC_000068 Xkr4 TSS74 chr1:3355887-3356119 212 - 504790 0 1.54544e+06 OK 0 0 0 OK TCONS_00000092 i Xkr4 XLOC_000069 Xkr4 TSS75 chr1:3356180-3356225 45 - 1.02717e+08 0 3.93246e+08 OK 0 0 0 OK TCONS_00000093 i Xkr4 XLOC_000070 Xkr4 TSS76 chr1:3363076-3363176 100 - 3.81001e+06 0 1.38903e+07 OK 0 0 0 OK TCONS_00000094 i Xkr4 XLOC_000072 Xkr4 TSS78 chr1:3363387-3363446 59 - 5.53654e+07 0 1.77783e+08 OK 0 0 0 OK TCONS_00000095 i Xkr4 XLOC_000074 Xkr4 TSS80 chr1:3364871-3364919 48 - 6.28966e+07 0 2.40795e+08 OK 0 0 0 OK TCONS_00000096 i Xkr4 XLOC_000076 Xkr4 TSS82 chr1:3367210-3367237 27 - 0 0 0 OK 0 0 0 OK TCONS_00000097 i Xkr4 XLOC_000078 Xkr4 TSS84 chr1:3369580-3369607 27 - 0 0 0 OK 0 0 0 OK TCONS_00000098 i Xkr4 XLOC_000079 Xkr4 TSS85 chr1:3375001-3375028 27 - 0 0 0 OK 0 0 0 OK TCONS_00000099 i Xkr4 XLOC_000081 Xkr4 TSS87 chr1:3379888-3379915 27 - 0 0 0 OK 0 0 0 OK TCONS_00000100 i Xkr4 XLOC_000082 Xkr4 TSS88 chr1:3386739-3386836 97 - 0 0 0 OK 0 0 0 OK