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changeset 6:604fa75232a2 draft

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Convert tool to use $GALAXY_SLOTS if available.
author Nate Coraor <nate@bx.psu.edu>
date Thu, 16 Jan 2014 13:13:52 -0500
parents 63b3133e535b
children 8da0eade1f59
files cuffdiff_wrapper.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/cuffdiff_wrapper.xml	Thu Jan 09 14:27:59 2014 -0500
+++ b/cuffdiff_wrapper.xml	Thu Jan 16 13:13:52 2014 -0500
@@ -9,7 +9,7 @@
         cuffdiff
             --no-update-check
             --FDR=$fdr
-            --num-threads="4"
+            --num-threads="\${GALAXY_SLOTS:-4}"
             --min-alignment-count=$min_alignment_count
             --library-norm-method=$library_norm_method
             --dispersion-method=$dispersion_method