Mercurial > repos > devteam > data_manager_fetch_ncbi_taxonomy
comparison data_manager/ncbi_taxonomy_fetcher.xml @ 0:fafcd2f5db36 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
| author | devteam |
|---|---|
| date | Thu, 08 Oct 2015 12:14:42 -0400 |
| parents | |
| children | 926847693e4d |
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| -1:000000000000 | 0:fafcd2f5db36 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.0"> | |
| 3 <description>taxonomy downloader</description> | |
| 4 <stdio> | |
| 5 <exit_code description="Error" level="fatal" range="1:" /> | |
| 6 </stdio> | |
| 7 <command interpreter="python"> | |
| 8 <![CDATA[ | |
| 9 data_manager.py --out "${out_file}" | |
| 10 #if $taxonomy_url: | |
| 11 --url "${taxonomy_url}" | |
| 12 #end if | |
| 13 #if $database_name: | |
| 14 --name "${database_name}" | |
| 15 #end if | |
| 16 ]]> | |
| 17 </command> | |
| 18 <inputs> | |
| 19 <param help="Enter a unique identifier, or leave blank for today's date" label="Name for this database" name="database_name" type="text" optional="True" /> | |
| 20 <param label="Enter URL for taxonomy files" name="taxonomy_url" type="text" /> | |
| 21 </inputs> | |
| 22 <outputs> | |
| 23 <data format="data_manager_json" name="out_file" /> | |
| 24 </outputs> | |
| 25 </tool> |