Mercurial > repos > devteam > data_manager_fetch_ncbi_taxonomy
diff data_manager/ncbi_taxonomy_fetcher.xml @ 0:fafcd2f5db36 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/data_managers/data_manager_fetch_ncbi_taxonomy/ commit 220e70acb66016873732b193b3ac20ae48083f0b-dirty
| author | devteam |
|---|---|
| date | Thu, 08 Oct 2015 12:14:42 -0400 |
| parents | |
| children | 926847693e4d |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager/ncbi_taxonomy_fetcher.xml Thu Oct 08 12:14:42 2015 -0400 @@ -0,0 +1,25 @@ +<?xml version="1.0"?> +<tool id="ncbi_taxonomy_fetcher" name="NCBI" tool_type="manage_data" version="1.0.0"> + <description>taxonomy downloader</description> + <stdio> + <exit_code description="Error" level="fatal" range="1:" /> + </stdio> + <command interpreter="python"> + <![CDATA[ + data_manager.py --out "${out_file}" + #if $taxonomy_url: + --url "${taxonomy_url}" + #end if + #if $database_name: + --name "${database_name}" + #end if + ]]> + </command> + <inputs> + <param help="Enter a unique identifier, or leave blank for today's date" label="Name for this database" name="database_name" type="text" optional="True" /> + <param label="Enter URL for taxonomy files" name="taxonomy_url" type="text" /> + </inputs> + <outputs> + <data format="data_manager_json" name="out_file" /> + </outputs> +</tool>