Mercurial > repos > devteam > data_manager_sam_fasta_index_builder

annotate data_manager_conf.xml @ 9:ad90c2da4f38 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_sam_fasta_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
author iuc
date Sun, 16 Apr 2023 08:31:25 +0000
parents d6b6db69d9bf
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
1 <?xml version="1.0"?>
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
2 <data_managers>
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
3
9
ad90c2da4f38 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_sam_fasta_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
iuc
parents: 0
diff changeset
4 <data_manager tool_file="data_manager/data_manager_sam_fasta_index_builder.xml" id="sam_fasta_index_builder">
0
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
5 <data_table name="fasta_indexes">
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
6 <output>
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
7 <column name="value" />
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
8 <column name="dbkey" />
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
9 <column name="name" />
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
10 <column name="path" output_ref="out_file" >
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
11 <move type="directory" relativize_symlinks="True">
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
12 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/sam_indexes/${value}</target>
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
14 </move>
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/sam_indexes/${value}/${path}</value_translation>
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
16 <value_translation type="function">abspath</value_translation>
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
17 </column>
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
18 </output>
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
19 </data_table>
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
20 </data_manager>
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
21
d6b6db69d9bf Uploaded data manager definition.
devteam
parents:
diff changeset
22 </data_managers>