Mercurial > repos > devteam > data_manager_twobit_builder

annotate data_manager_conf.xml @ 4:16c0c73b28ad draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_twobit_builder commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
author iuc
date Thu, 28 Nov 2019 15:49:13 -0500
parents df883cc67fbd
children 62359a151521
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74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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1 <?xml version="1.0"?>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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2 <data_managers>
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df883cc67fbd planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit ddee21fa767f3234a4e5a9acfeeabdded32e7d01
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4 <data_manager tool_file="data_manager/twobit_builder.xml" id="twobit_builder" version="0.0.2">
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74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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5 <data_table name="lastz_seqs">
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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6 <output>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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7 <column name="value" />
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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8 <column name="name" />
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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9 <column name="path" output_ref="out_file" >
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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10 <move type="file">
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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11 <source>${path}</source>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/seq/${path}</target>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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13 </move>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/seq/${path}</value_translation>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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15 </column>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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16 </output>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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17 </data_table>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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19 <data_table name="twobit">
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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20 <output>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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21 <column name="value" />
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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22 <column name="path" output_ref="out_file" ><!-- move happens above -->
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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23 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/seq/${path}</value_translation>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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24 </column>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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25 </output>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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26 </data_table>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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28 <data_table name="alignseq_seq">
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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29 <output>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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30 <column name="type" /><!-- always seq -->
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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31 <column name="value" /><!-- also dbkey -->
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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32 <column name="path" output_ref="out_file" ><!-- move happens above -->
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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33 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/seq/${path}</value_translation>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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34 </column>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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35 </output>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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36 </data_table>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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38 </data_manager>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
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40 </data_managers>