Mercurial > repos > devteam > data_manager_twobit_builder

annotate data_manager/twobit_builder.xml @ 1:df883cc67fbd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit ddee21fa767f3234a4e5a9acfeeabdded32e7d01
author devteam
date Thu, 19 Jan 2017 11:45:43 -0500
parents 74b09c8e5f6e
children 9946bc39c834
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
df883cc67fbd planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit ddee21fa767f3234a4e5a9acfeeabdded32e7d01
devteam
parents: 0
diff changeset
1 <tool id="twobit_builder_data_manager" name="TwoBit" tool_type="manage_data" version="0.0.2">
0
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
2 <requirements>
1
df883cc67fbd planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit ddee21fa767f3234a4e5a9acfeeabdded32e7d01
devteam
parents: 0
diff changeset
3 <requirement type="package" version="324">ucsc-fatotwobit</requirement>
0
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
4 </requirements>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
5 <description>builder</description>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
6 <command interpreter="python">twobit_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}"</command>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
7 <inputs>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
8 <param name="all_fasta_source" type="select" label="Source FASTA Sequence">
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
9 <options from_data_table="all_fasta"/>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
10 </param>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
11 <param type="text" name="sequence_name" value="" label="Name of sequence" />
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
12 <param type="text" name="sequence_id" value="" label="ID for sequence" />
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
13
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
14 </inputs>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
15 <outputs>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
16 <data name="out_file" format="data_manager_json"/>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
17 </outputs>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
18
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
19 <tests>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
20 <test>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
21 <param name="all_fasta_source" value="sacCer2"/>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
22 <param name="sequence_name" value=""/>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
23 <output name="sequence_id" file="data_manager_two_bit_out_1.dat"/>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
24 </test>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
25 </tests>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
26
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
27 <help>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
28
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
29 .. class:: infomark
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
30
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
31 **Notice:** If you leave name, description, or id blank, it will be generated automatically.
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
32
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
33 </help>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
34 </tool>
74b09c8e5f6e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 130cb0c08ad3c5b858ba46b1024dcdccc3cb68c6-dirty
devteam
parents:
diff changeset
35