Mercurial > repos > devteam > fastq_paired_end_interlacer

changeset 3:ef49268ee579 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_interlacer commit 28c441e8aa66a55d276b0f6325d34086eb715872
author devteam
date Sat, 07 Oct 2017 10:01:05 -0400
parents effda79f510c
children 3e396e702cea
files fastq_paired_end_interlacer.xml test-data/paired_end_1_errors.fastqsanger.bz2 test-data/paired_end_1_errors.fastqsanger.gz test-data/paired_end_2_errors.fastqsanger.bz2 test-data/paired_end_2_errors.fastqsanger.gz
diffstat 5 files changed, 16 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_paired_end_interlacer.xml	Sat Sep 30 14:59:00 2017 -0400
+++ b/fastq_paired_end_interlacer.xml	Sat Oct 07 10:01:05 2017 -0400
@@ -1,7 +1,7 @@
-<tool id="fastq_paired_end_interlacer" name="FASTQ interlacer" version="1.2.0">
+<tool id="fastq_paired_end_interlacer" name="FASTQ interlacer" version="1.2.0.1">
     <description>on paired end reads</description>
     <requirements>
-        <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement>
+        <requirement type="package" version="1.1.2">galaxy_sequence_utils</requirement>
     </requirements>
     <command><![CDATA[
 gx-fastq-paired-end-interlacer
@@ -61,6 +61,20 @@
             <output name="outfile_singles" file="paired_end_merged_cleaned_singles.fastqsanger" ftype="fastqsanger" />
         </test>
         <test>
+            <param name="reads_selector" value="paired" />
+            <param name="input1_file" value="paired_end_1_errors.fastqsanger.gz" ftype="fastqsanger.gz" />
+            <param name="input2_file" value="paired_end_2_errors.fastqsanger.gz" ftype="fastqsanger.gz" />
+            <output name="outfile_pairs" file="paired_end_merged_cleaned.fastqsanger" ftype="fastqsanger.gz" decompress="true" />
+            <output name="outfile_singles" file="paired_end_merged_cleaned_singles.fastqsanger" ftype="fastqsanger.gz" decompress="true" />
+        </test>
+        <test>
+            <param name="reads_selector" value="paired" />
+            <param name="input1_file" value="paired_end_1_errors.fastqsanger.bz2" ftype="fastqsanger.bz2" />
+            <param name="input2_file" value="paired_end_2_errors.fastqsanger.bz2" ftype="fastqsanger.bz2" />
+            <output name="outfile_pairs" file="paired_end_merged_cleaned.fastqsanger" ftype="fastqsanger.bz2" decompress="true" />
+            <output name="outfile_singles" file="paired_end_merged_cleaned_singles.fastqsanger" ftype="fastqsanger.bz2" decompress="true" />
+        </test>
+        <test>
             <param name="reads_selector" value="paired_collection" />
             <param name="reads_coll">
                 <collection type="paired">
Binary file test-data/paired_end_1_errors.fastqsanger.bz2 has changed
Binary file test-data/paired_end_1_errors.fastqsanger.gz has changed
Binary file test-data/paired_end_2_errors.fastqsanger.bz2 has changed
Binary file test-data/paired_end_2_errors.fastqsanger.gz has changed