Mercurial > repos > devteam > fastq_paired_end_splitter

changeset 7:7fafac615aa1 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_paired_end_splitter commit a5766d27dcddd1891766476a913d0eae1ec7a3c9
author iuc
date Sun, 23 Nov 2025 17:50:59 +0000
parents 397dc333436b
children
files fastq_paired_end_splitter.xml macros.xml
diffstat 2 files changed, 10 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_paired_end_splitter.xml	Fri Oct 04 10:35:14 2024 +0000
+++ b/fastq_paired_end_splitter.xml	Sun Nov 23 17:50:59 2025 +0000
@@ -11,20 +11,21 @@
     </edam_operations>
     <expand macro="requirements"/>
     <command><![CDATA[
-gx-fastq-paired-end-splitter '$input1_file' '${input1_file.extension[len('fastq'):]}' '$output1_file' '$output2_file'
+gx-fastq-paired-end-splitter '$input1_file' '${input1_file.extension[len('fastq'):]}' '$pairs.forward' '$pairs.reverse'
     ]]></command>
     <inputs>
         <param name="input1_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ reads" />
     </inputs>
     <outputs>
-        <data name="output1_file" format_source="input1_file" label="${tool.name} on ${on_string}: Forward"/>
-        <data name="output2_file" format_source="input1_file" label="${tool.name} on ${on_string}: Reverse"/>
+        <collection name="pairs" format_source="input1_file" type="paired" label="${tool.name} on ${on_string}"/>
     </outputs>
     <tests>
         <test>
             <param name="input1_file" value="3.fastqsanger" ftype="fastqsanger" />
-            <output name="output1_file" file="split_pair_reads_1.fastqsanger" ftype="fastqsanger" />
-            <output name="output2_file" file="split_pair_reads_2.fastqsanger" ftype="fastqsanger" />
+            <output_collection name="pairs">
+                <element name="forward" value="split_pair_reads_1.fastqsanger" ftype="fastqsanger"/>
+                <element name="reverse" value="split_pair_reads_2.fastqsanger" ftype="fastqsanger"/>
+            </output_collection>
         </test>
     </tests>
     <help><![CDATA[
--- a/macros.xml	Fri Oct 04 10:35:14 2024 +0000
+++ b/macros.xml	Sun Nov 23 17:50:59 2025 +0000
@@ -1,11 +1,11 @@
 <macros>
-    <token name="@TOOL_VERSION@">1.1.5</token>
-    <token name="@VERSION_SUFFIX@">2</token>
-    <token name="@PROFILE@">23.1</token>
+    <token name="@TOOL_VERSION@">1.2</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">24.2</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">galaxy_sequence_utils</requirement>
             <yield/>
         </requirements>
-    </xml>>
+    </xml>
 </macros>