comparison fastq_trimmer.xml @ 1:e0cfb5a703ce draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_trimmer commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:42:58 -0500
parents 0b9feb0ed628
children 430b9da91435
comparison
equal deleted inserted replaced
0:0b9feb0ed628 1:e0cfb5a703ce
79 <param name="keep_zero_length" value="exclude_zero_length" /> 79 <param name="keep_zero_length" value="exclude_zero_length" />
80 <output name="output_file" file="fastq_trimmer_out1.fastqsanger" /> 80 <output name="output_file" file="fastq_trimmer_out1.fastqsanger" />
81 </test> 81 </test>
82 </tests> 82 </tests>
83 <help> 83 <help>
84 **What is does**
85
84 This tool allows you to trim the ends of reads. 86 This tool allows you to trim the ends of reads.
85 87
86 You can specify either absolute or percent-based offsets. Offsets are calculated, starting at 0, from the respective end to be trimmed. When using the percent-based method, offsets are rounded to the nearest integer. 88 You can specify either absolute or percent-based offsets. Offsets are calculated, starting at 0, from the respective end to be trimmed. When using the percent-based method, offsets are rounded to the nearest integer.
87 89
88 For example, if you have a read of length 36:: 90 For example, if you have a read of length 36::
112 114
113 Trimming a color space read will cause any adapter base to be lost. 115 Trimming a color space read will cause any adapter base to be lost.
114 116
115 ------ 117 ------
116 118
117 **Citation**
118
119 If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. &lt;http://www.ncbi.nlm.nih.gov/pubmed/20562416&gt;`_
120
121
122 </help> 119 </help>
120
121 <citations>
122 <citation type="doi">10.1093/bioinformatics/btq281</citation>
123 </citations>
124
123 </tool> 125 </tool>