Mercurial > repos > devteam > fastq_trimmer
changeset 1:e0cfb5a703ce draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_trimmer commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:42:58 -0500 |
| parents | 0b9feb0ed628 |
| children | 430b9da91435 |
| files | fastq_trimmer.xml tool_dependencies.xml |
| diffstat | 2 files changed, 8 insertions(+), 6 deletions(-) [+] |
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--- a/fastq_trimmer.xml Mon Jan 27 09:27:32 2014 -0500 +++ b/fastq_trimmer.xml Wed Nov 11 12:42:58 2015 -0500 @@ -81,6 +81,8 @@ </test> </tests> <help> +**What is does** + This tool allows you to trim the ends of reads. You can specify either absolute or percent-based offsets. Offsets are calculated, starting at 0, from the respective end to be trimmed. When using the percent-based method, offsets are rounded to the nearest integer. @@ -114,10 +116,10 @@ ------ -**Citation** - -If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. <http://www.ncbi.nlm.nih.gov/pubmed/20562416>`_ - - </help> + + <citations> + <citation type="doi">10.1093/bioinformatics/btq281</citation> + </citations> + </tool>
--- a/tool_dependencies.xml Mon Jan 27 09:27:32 2014 -0500 +++ b/tool_dependencies.xml Wed Nov 11 12:42:58 2015 -0500 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="galaxy_sequence_utils" version="1.0.0"> - <repository changeset_revision="0643676ad5f7" name="package_galaxy_utils_1_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="0643676ad5f7" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>