Mercurial > repos > devteam > fastx_nucleotides_distribution
changeset 2:9353010b95df draft
Uploaded tool help images.
| author | devteam |
|---|---|
| date | Tue, 03 Jun 2014 15:09:10 -0400 |
| parents | 63d6e2daad48 |
| children | 18a51655db17 |
| files | fastq_nucleotides_distribution_1.png fastq_nucleotides_distribution_2.png fastq_nucleotides_distribution_3.png fastq_nucleotides_distribution_4.png fastx_nucleotides_distribution.xml tool_dependencies.xml |
| diffstat | 6 files changed, 4 insertions(+), 10 deletions(-) [+] |
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--- a/fastx_nucleotides_distribution.xml Tue Dec 03 12:36:14 2013 -0500 +++ b/fastx_nucleotides_distribution.xml Tue Jun 03 15:09:10 2014 -0400 @@ -28,19 +28,19 @@ The following chart clearly shows the barcode used at the 5'-end of the library: **GATCT** -.. image:: ${static_path}/fastx_icons/fastq_nucleotides_distribution_1.png +.. image:: fastq_nucleotides_distribution_1.png In the following chart, one can almost 'read' the most abundant sequence by looking at the dominant values: **TGATA TCGTA TTGAT GACTG AA...** -.. image:: ${static_path}/fastx_icons/fastq_nucleotides_distribution_2.png +.. image:: fastq_nucleotides_distribution_2.png The following chart shows a growing number of unknown (N) nucleotides towards later cycles (which might indicate a sequencing problem): -.. image:: ${static_path}/fastx_icons/fastq_nucleotides_distribution_3.png +.. image:: fastq_nucleotides_distribution_3.png But most of the time, the chart will look rather random: -.. image:: ${static_path}/fastx_icons/fastq_nucleotides_distribution_4.png +.. image:: fastq_nucleotides_distribution_4.png ------
--- a/tool_dependencies.xml Tue Dec 03 12:36:14 2013 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="fastx_toolkit" version="0.0.13"> - <repository changeset_revision="ec66ae4c269b" name="package_fastx_toolkit_0_0_13" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency>