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comparison macros.xml @ 40:0d8581534009 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/freebayes commit 48700fed491e8056cddd1ee7d8bc9ca08e19fe8d
author iuc
date Tue, 05 Aug 2025 13:47:58 +0000
parents 85dc96ebc770
children
comparison
equal deleted inserted replaced
39:85dc96ebc770 40:0d8581534009
2 <token name="@TOOL_VERSION@">1.3.10</token> 2 <token name="@TOOL_VERSION@">1.3.10</token>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <requirement type="package" version="@TOOL_VERSION@">freebayes</requirement> 5 <requirement type="package" version="@TOOL_VERSION@">freebayes</requirement>
6 <requirement type="package" version="1.22">samtools</requirement> 6 <requirement type="package" version="1.22">samtools</requirement>
7 <requirement type="package" version="9.5">coreutils</requirement>
7 <yield /> 8 <yield />
8 </requirements> 9 </requirements>
9 </xml> 10 </xml>
10 <xml name="version_command"> 11 <xml name="version_command">
11 <version_command>freebayes --version | cut -d v -f 3</version_command> 12 <version_command>freebayes --version | cut -d v -f 3</version_command>
50 --min-coverage ${coverage_options.min_coverage} 51 --min-coverage ${coverage_options.min_coverage}
51 --skip-coverage ${coverage_options.skip_coverage} 52 --skip-coverage ${coverage_options.skip_coverage}
52 --limit-coverage ${coverage_options.limit_coverage} 53 --limit-coverage ${coverage_options.limit_coverage}
53 </token> 54 </token>
54 <xml name="par_min_cov"> 55 <xml name="par_min_cov">
55 <param name="min_coverage" argument="--min-coverage" type="integer" value="0" label="Require at least this coverage to process a site" /> 56 <param argument="--min-coverage" type="integer" value="0" label="Require at least this coverage to process a site" />
56 <param name="limit_coverage" argument="--limit-coverage" type="integer" value="0" label="Downsample per-sample coverage to this level if greater than this coverage" /> 57 <param argument="--limit-coverage" type="integer" value="0" label="Downsample per-sample coverage to this level if greater than this coverage" />
57 <param name="skip_coverage" argument="--skip-coverage" type="integer" value="0" label="Skip processing of alignments overlapping positions with coverage greater than this" /> 58 <param argument="--skip-coverage" type="integer" value="0" label="Skip processing of alignments overlapping positions with coverage greater than this" />
58 </xml> 59 </xml>
59 </macros> 60 </macros>