Mercurial > repos > devteam > freebayes

diff macros.xml @ 40:0d8581534009 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/freebayes commit 48700fed491e8056cddd1ee7d8bc9ca08e19fe8d
author iuc
date Tue, 05 Aug 2025 13:47:58 +0000
parents 85dc96ebc770
children
line wrap: on
line diff
--- a/macros.xml	Tue Jun 10 07:59:51 2025 +0000
+++ b/macros.xml	Tue Aug 05 13:47:58 2025 +0000
@@ -4,6 +4,7 @@
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">freebayes</requirement>
             <requirement type="package" version="1.22">samtools</requirement>
+            <requirement type="package" version="9.5">coreutils</requirement>
             <yield />
         </requirements>
     </xml>
@@ -52,8 +53,8 @@
         --limit-coverage ${coverage_options.limit_coverage}
     </token>
     <xml name="par_min_cov">
-        <param name="min_coverage" argument="--min-coverage" type="integer" value="0" label="Require at least this coverage to process a site" />
-        <param name="limit_coverage" argument="--limit-coverage" type="integer" value="0" label="Downsample per-sample coverage to this level if greater than this coverage" />
-        <param name="skip_coverage" argument="--skip-coverage" type="integer" value="0" label="Skip processing of alignments overlapping positions with coverage greater than this" />
+        <param argument="--min-coverage" type="integer" value="0" label="Require at least this coverage to process a site" />
+        <param argument="--limit-coverage" type="integer" value="0" label="Downsample per-sample coverage to this level if greater than this coverage" />
+        <param argument="--skip-coverage" type="integer" value="0" label="Skip processing of alignments overlapping positions with coverage greater than this" />
     </xml>
 </macros>