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comparison freebayes.xml @ 4:e54bb199a47b

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Fixed git revision string in tool_dependencies.xml and added functional test data
author greg <greg@bx.psu.edu>
date Wed, 15 Aug 2012 10:43:46 -0400
parents 838dd557c84c
children 949ac66308a7
comparison
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3:213a3d6b579a 4:e54bb199a47b
418 </outputs> 418 </outputs>
419 <tests> 419 <tests>
420 <test> 420 <test>
421 <param name="reference_source_selector" value="history" /> 421 <param name="reference_source_selector" value="history" />
422 <param name="ref_file" ftype="fasta" value="phiX.fasta"/> 422 <param name="ref_file" ftype="fasta" value="phiX.fasta"/>
423 <param name="input_bam" ftype="bam" value="gatk/fake_phiX_reads_1.bam"/> 423 <param name="input_bam" ftype="bam" value="fake_phiX_reads_1.bam"/>
424 <param name="options_type_selector" value="basic"/> 424 <param name="options_type_selector" value="basic"/>
425 <output name="output_vcf" file="variant_detection/freebayes/freebayes_out_1.vcf.contains" compare="contains"/> 425 <output name="output_vcf" file="freebayes_out_1.vcf.contains" compare="contains"/>
426 <!-- <output name="output_failed_alleles_bed" file="empty_file.dat" /> 426 <!-- <output name="output_failed_alleles_bed" file="empty_file.dat" />
427 <output name="output_trace" file="variant_detection/freebayes/freebayes_out_1.output_trace" /> --> 427 <output name="output_trace" file="freebayes_out_1.output_trace" /> -->
428 </test> 428 </test>
429 </tests> 429 </tests>
430 <help> 430 <help>
431 **What it does** 431 **What it does**
432 432