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diff freebayes.xml @ 4:e54bb199a47b

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Fixed git revision string in tool_dependencies.xml and added functional test data
author greg <greg@bx.psu.edu>
date Wed, 15 Aug 2012 10:43:46 -0400
parents 838dd557c84c
children 949ac66308a7
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--- a/freebayes.xml	Fri Jul 13 12:52:45 2012 -0400
+++ b/freebayes.xml	Wed Aug 15 10:43:46 2012 -0400
@@ -420,11 +420,11 @@
     <test>
      <param name="reference_source_selector" value="history" />
       <param name="ref_file" ftype="fasta" value="phiX.fasta"/>
-      <param name="input_bam" ftype="bam" value="gatk/fake_phiX_reads_1.bam"/>
+      <param name="input_bam" ftype="bam" value="fake_phiX_reads_1.bam"/>
       <param name="options_type_selector" value="basic"/>
-      <output name="output_vcf" file="variant_detection/freebayes/freebayes_out_1.vcf.contains" compare="contains"/>
+      <output name="output_vcf" file="freebayes_out_1.vcf.contains" compare="contains"/>
       <!-- <output name="output_failed_alleles_bed" file="empty_file.dat" />
-      <output name="output_trace" file="variant_detection/freebayes/freebayes_out_1.output_trace" /> -->
+      <output name="output_trace" file="freebayes_out_1.output_trace" /> -->
     </test>
   </tests>
   <help>