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diff tool_dependencies.xml @ 7:d3bf1e86b243

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Make samtools sed command gnu compatible.
author Daniel Blankenberg <dan@bx.psu.edu>
date Wed, 29 Aug 2012 11:46:04 -0400
parents 949ac66308a7
children 28e422c589ac
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Aug 24 16:03:20 2012 -0400
+++ b/tool_dependencies.xml	Wed Aug 29 11:46:04 2012 -0400
@@ -24,7 +24,7 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action>
-                <action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action>
+                <action type="shell_command">sed -i.bak -e 's/-lcurses/-lncurses/g' Makefile</action>
                 <action type="shell_command">make</action>
                 <action type="move_file">
                     <source>samtools</source>