--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GMAJ.py	Mon Jan 27 09:26:22 2014 -0500
@@ -0,0 +1,23 @@
+#!/usr/bin/env python
+
+"""
+Script that Creates a zip file for use by GMAJ
+"""
+import sys, zipfile
+
+def __main__():
+    #create a new zip file
+    out_file  = zipfile.ZipFile( sys.argv[1], "w" )
+    #add info files
+    out_file.write( sys.argv[3], "input.gmaj" ) #THIS FILE MUST BE ADDED FIRST
+    out_file.write( sys.argv[2], "input.maf" )
+    
+    #add annotation files
+    for line in open( sys.argv[4] ):
+        try:
+            out_file.write( *[ field.strip() for field in line.split( "=", 1 ) ] )
+        except:
+            continue
+    out_file.close()
+
+if __name__ == "__main__": __main__()