Mercurial > repos > devteam > gmaj
view GMAJ.py @ 0:2cd5ee197ec7 draft default tip
Imported from capsule None
author | devteam |
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date | Mon, 27 Jan 2014 09:26:22 -0500 |
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#!/usr/bin/env python """ Script that Creates a zip file for use by GMAJ """ import sys, zipfile def __main__(): #create a new zip file out_file = zipfile.ZipFile( sys.argv[1], "w" ) #add info files out_file.write( sys.argv[3], "input.gmaj" ) #THIS FILE MUST BE ADDED FIRST out_file.write( sys.argv[2], "input.maf" ) #add annotation files for line in open( sys.argv[4] ): try: out_file.write( *[ field.strip() for field in line.split( "=", 1 ) ] ) except: continue out_file.close() if __name__ == "__main__": __main__()