Mercurial > repos > devteam > kraken
annotate test-data/test_database.loc @ 8:8ba2174315aa draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
author | iuc |
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date | Mon, 14 Jan 2019 16:48:56 -0500 |
parents | 7c41dbaa9875 |
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rev | line source |
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8
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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1 # Tab separated with three columns: |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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2 # - value (Galaxy records this in the Galaxy DB) |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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3 # - name (Galaxy shows this in the UI) |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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4 # - path (folder name containing the Kraken DB) |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
|
5 # |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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6 # Modern usage assumes $path is the folder containing |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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7 # the Kraken database of interest: |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
|
8 # |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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9 new_style_test_entry "Test Database" ${__HERE__}/test_db |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
|
10 |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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11 # The kraken wrapper still supports an alternative |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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12 # legacy usage where $path/$name is the folder |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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13 # containing the Kraken database of interest, meaning |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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14 # $name must be both a folder name and human readable |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
|
15 # description of the DB to show in the Galaxy UI: |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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16 old_style_test_entry test_db ${__HERE__} |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
|
17 |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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18 # NOTE: This legacy style should be avoided as other |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
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19 # tools also using the kraken_database.loc file may |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
3
diff
changeset
|
20 # not understand it! |