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annotate tool-data/kraken_databases.loc.sample @ 10:766d5f63b0f4 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 3a94fbf6a188ea81441ef2f654ba5a74bff56f22
author iuc
date Tue, 12 Mar 2024 16:10:22 +0000
parents 8ba2174315aa
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
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diff changeset
1 # Expect three columns, tab separated, as follows:
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
3 # - name (Galaxy shows this in the UI)
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
4 # - path (folder name containing the Kraken DB)
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
5 #
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
6 # e.g.
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
7 # plants2018<tab>Plant genomes (2018)<tab>/path/to/krakenDB/plants_2018
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
8 #
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
9 # For backward compatibility the Kraken wrapper also accepts:
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
10 # - value (Galaxy records this in the Galaxy DB)
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
11 # - name (Final part of folder name, Galaxy shows this in the UI)
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
12 # - path (Parent folder name, where $path/$name contains the Kraken DB)
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
13 #
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
14 # e.g.
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
15 # plants2018<tab>plants_2018<tab>/path/to/krakenDB
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
16 #
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
17 # Please avoid this legacy usage, as not all tools using
8ba2174315aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents: 0
diff changeset
18 # the kraken_databases.loc file will understand it.