Mercurial > repos > devteam > kraken_report

annotate tool-data/kraken_databases.loc.sample @ 6:1902d3de4a4f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
author iuc
date Wed, 04 Dec 2019 06:52:03 -0500
parents f2757ab26483
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
1 # Expect three columns, tab separated, as follows:
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
3 # - name (Galaxy shows this in the UI)
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
4 # - path (folder name containing the Kraken DB)
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
5 #
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
6 # e.g.
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
7 # plants2018<tab>Plant genomes (2018)<tab>/path/to/krakenDB/plants_2018
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
8 #
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
9 # For backward compatibility the Kraken wrapper also accepts:
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
10 # - value (Galaxy records this in the Galaxy DB)
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
11 # - name (Final part of folder name, Galaxy shows this in the UI)
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
12 # - path (Parent folder name, where $path/$name contains the Kraken DB)
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
13 #
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
14 # e.g.
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
15 # plants2018<tab>plants_2018<tab>/path/to/krakenDB
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
16 #
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
17 # Please avoid this legacy usage, as not all tools using
1902d3de4a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
18 # the kraken_databases.loc file will understand it.