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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 3a94fbf6a188ea81441ef2f654ba5a74bff56f22
author iuc
date Tue, 12 Mar 2024 16:10:55 +0000
parents 9a5be5b1a5c9
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
1 # Expect three columns, tab separated, as follows:
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
3 # - name (Galaxy shows this in the UI)
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
4 # - path (folder name containing the Kraken DB)
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
5 #
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
6 # e.g.
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
7 # plants2018<tab>Plant genomes (2018)<tab>/path/to/krakenDB/plants_2018
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
8 #
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
9 # For backward compatibility the Kraken wrapper also accepts:
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
10 # - value (Galaxy records this in the Galaxy DB)
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
11 # - name (Final part of folder name, Galaxy shows this in the UI)
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
12 # - path (Parent folder name, where $path/$name contains the Kraken DB)
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
13 #
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
14 # e.g.
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
15 # plants2018<tab>plants_2018<tab>/path/to/krakenDB
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
16 #
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
17 # Please avoid this legacy usage, as not all tools using
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents: 0
diff changeset
18 # the kraken_databases.loc file will understand it.